Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001307 (paaH) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001307 showshow history
Names
paaH ECDH10B_1520
Product
3-hydroxybutyryl-CoA dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1547673 1549100 1428 476
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Automated Process Approved IPR008927 (IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily) Jul 2009
Automated Process Approved IPR011967 (IPR011967 3-hydroxyacyl-CoA dehydrogenase PaaC) Jul 2009
Automated Process Approved IPR006176 (IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding) Jul 2009
Automated Process Approved IPR006108 (IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal) Jul 2009
Automated Process Approved IPR013328 (IPR013328 6-phosphogluconate dehydrogenase, domain 2) Jul 2009
Automated Process Approved IPR006180 (IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006631 fatty acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006176
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008927
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name paaH Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004663
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1520 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product 3-hydroxybutyryl-CoA dehydrogenase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR008927
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011967 3-hydroxyacyl-CoA dehydrogenase PaaC Protein Sequence Similarity - InterPro Domain: IPR011967
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding Protein Sequence Similarity - InterPro Domain: IPR006176
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site Protein Sequence Similarity - InterPro Domain: IPR006180
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013328 6-phosphogluconate dehydrogenase, domain 2 Protein Sequence Similarity - InterPro Domain: IPR013328
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR006108
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004663 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004663
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006631 fatty acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006176
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008927
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004565 paaH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004172 paaH CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009980 paaH CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008029 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005293 paaH CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005162 PaaH CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005345 paaH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006249 paaH CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006020 paaC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006160 paaC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004663 paaH CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001430 paaH CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001509 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1542673 to 1554100
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001300paaACDSforward15425461543475Upstream
AEC-0001301paaBCDSforward15434871543774Upstream
AEC-0001302paaCCDSforward15437831544529Upstream
AEC-0001303paaDCDSforward15445441545041Upstream
AEC-0001304paaECDSforward15450491546119Upstream
AEC-0001305paaFCDSforward15461161546883Upstream
AEC-0001306paaGCDSforward15468831547671Upstream
AEC-0001307paaHCDSforward15476731549100Matches
AEC-0001308paaICDSforward15490901549512Overlaps Downstream
AEC-0001309paaJCDSforward15495121550717Downstream
AEC-0001310paaKCDSforward15507441552057Downstream
AEC-0001311paaXCDSforward15521581553108Downstream
AEC-0001312paaYCDSforward15530901553680Downstream
AEC-0001313ydbA_1CDSpforward15540111556569Downstream
AEC-0004507ydbApseudogeneforward15540111556528(Interval #1) Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948