Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001309 (paaJ) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001309 showshow history
Names
paaJ ECDH10B_1522
Product
predicted beta-ketoadipyl CoA thiolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1549512 1550717 1206 402
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR016039 (IPR016039 Thiolase-like) Jul 2009
Automated Process Approved IPR002155 (IPR002155 Thiolase) Jul 2009
Automated Process Approved IPR012793 (IPR012793 Beta-ketoadipyl CoA thiolase) Jul 2009
Automated Process Approved IPR016038 (IPR016038 (DEPRECATED) Thiolase-like, subgroup) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016039
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0019619 3,4-dihydroxybenzoate catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012793
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012793
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016039
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name paaJ Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004668
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1522 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted beta-ketoadipyl CoA thiolase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR016039 Thiolase-like Protein Sequence Similarity - InterPro Domain: IPR016039
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002155 Thiolase Protein Sequence Similarity - InterPro Domain: IPR002155
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012793 Beta-ketoadipyl CoA thiolase Protein Sequence Similarity - InterPro Domain: IPR012793
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016038 (DEPRECATED) Thiolase-like, subgroup Protein Sequence Similarity - InterPro Domain: IPR016038
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004668 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004668
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0019619 3,4-dihydroxybenzoate catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012793
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016039
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012793
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016039
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004654 paaJ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003871 paaJ CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009982 paaJ CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008027 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005295 paaJ CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005160 PaaJ CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005343 paaJ CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006251 paaJ CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006022 pcaF CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006162 pcaF CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004668 paaJ CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001432 paaJ CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001511 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1544512 to 1555717
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001302paaCCDSforward15437831544529Upstream
AEC-0001303paaDCDSforward15445441545041Upstream
AEC-0001304paaECDSforward15450491546119Upstream
AEC-0001305paaFCDSforward15461161546883Upstream
AEC-0001306paaGCDSforward15468831547671Upstream
AEC-0001307paaHCDSforward15476731549100Upstream
AEC-0001308paaICDSforward15490901549512Overlaps Upstream
AEC-0001309paaJCDSforward15495121550717Matches
AEC-0001310paaKCDSforward15507441552057Downstream
AEC-0001311paaXCDSforward15521581553108Downstream
AEC-0001312paaYCDSforward15530901553680Downstream
AEC-0001313ydbA_1CDSpforward15540111556569Downstream
AEC-0004507ydbApseudogeneforward15540111556528(Interval #1) Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948