Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001310 (paaK) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001310 showshow history
Names
paaK ECDH10B_1523
Product
phenylacetyl-CoA ligase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1550744 1552057 1314 438
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011880 (IPR011880 Phenylacetate-CoA ligase) Jul 2009
Automated Process Approved IPR000873 (IPR000873 AMP-dependent synthetase/ligase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name paaK Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004671
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1523 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product phenylacetyl-CoA ligase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR011880 Phenylacetate-CoA ligase Protein Sequence Similarity - InterPro Domain: IPR011880
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000873 AMP-dependent synthetase/ligase Protein Sequence Similarity - InterPro Domain: IPR000873
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004671 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004671
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004995 paaK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004482 paaK CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009983 paaK CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008026 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005296 paaK CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005159 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005342 paaK CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006252 paaK CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006023 paaF CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006163 paaF CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004671 paaK CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001433 paaK CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001512 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007074 paaK CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1545744 to 1557057
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001304paaECDSforward15450491546119Upstream
AEC-0001305paaFCDSforward15461161546883Upstream
AEC-0001306paaGCDSforward15468831547671Upstream
AEC-0001307paaHCDSforward15476731549100Upstream
AEC-0001308paaICDSforward15490901549512Upstream
AEC-0001309paaJCDSforward15495121550717Upstream
AEC-0001310paaKCDSforward15507441552057Matches
AEC-0001311paaXCDSforward15521581553108Downstream
AEC-0001312paaYCDSforward15530901553680Downstream
AEC-0001313ydbA_1CDSpforward15540111556569Downstream
AEC-0004507ydbApseudogeneforward15540111556528(Interval #1) Downstream
AEC-0000028IS2.4repeat_regioncomplement15565291557859Downstream
AEC-0001314insD-2CDScomplement15565401557445Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948