Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001382 (yddG) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001382 showshow history
Names
yddG ECDH10B_1604
Product
predicted methyl viologen efflux pump
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1634907 1635788 882 294

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Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000620 (IPR000620 EamA domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000620
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yddG Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004912
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1604 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted methyl viologen efflux pump Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000620 EamA domain Protein Sequence Similarity - InterPro Domain: IPR000620
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004912 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004912
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000620
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001592 yddG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001464 yddG CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000528 yddG CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003986 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005480 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001484 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010070 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001445 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007938 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005336 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005087 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078020 yddG CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005264 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007966 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001720 yddG CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006093 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003342 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005462 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009827 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008008 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007058 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006924 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006933 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011399 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008065 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008436 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007024 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007129 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008784 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026010 yddG CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007977 yddG CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006233 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004912 yddG CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001514 yddG CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001590 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001700 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132047 yddG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002043 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001695 yddG CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062678 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004319 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002902 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003279 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005768 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001452 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001825 yddG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006042 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004835 yddG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004716 yddG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004904 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006111 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005051 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005100 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004561 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005183 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006052 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004733 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001306 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001297 yddG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001736 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006299 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005322 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005772 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005110 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0095180 yddG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007786 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005752 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007107 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001747 yddG CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001847 yddG CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072982 yddG CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088053 yddG CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001864 yddG CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001796 yddG CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002249 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002192 yddG CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000162 yddG CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002896 yddG CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001652 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234809 rhaT1 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005132 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003494 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008208 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003944 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126819 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006383 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005872 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005859 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004211 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030410 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006614 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000827 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003524 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004907 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007372 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000760 yddG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000882 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004135 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1629907 to 1640788
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001377narZCDScomplement16274691631209Downstream
AEC-0001378narUCDScomplement16312911632679Downstream
AEC-0001379yddJpseudogenecomplement16330031634057Downstream
AEC-0001380yddKpseudogenecomplement16340471634372Downstream
AEC-0001381yddLpseudogenecomplement16343701634647Downstream
AEC-0001382yddGCDScomplement16349071635788Matches
AEC-0001383fdnGCDSforward16360201639067Upstream
AEC-0001384fdnHCDSforward16390801639964Upstream
AEC-0001385fdnICDSforward16399571640610Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948