Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001388 (maeA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001388 showshow history
Names
maeA sfcA ECDH10B_1610
Product
malate dehydrogenase, (decarboxylating, NAD-requiring) (malic enzyme)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1642591 1644288 1698 566
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR015884 (IPR015884 Malic enzyme, conserved site) Jul 2009
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Automated Process Approved IPR012301 (IPR012301 Malic enzyme, N-terminal domain) Jul 2009
Automated Process Approved IPR012302 (IPR012302 Malic enzyme, NAD-binding) Jul 2009
Automated Process Approved IPR001891 (IPR001891 Malic oxidoreductase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006108 malate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001891
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012302
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004470 malic enzyme activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001891
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012301
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015884
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015884
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name maeA Published Annotation - PubMed ID: 2199308
Reference: Escherichia coli K-12 		Feb 2008
Person Approved synonym sfcA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004931
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1610 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product malate dehydrogenase, (decarboxylating, NAD-requiring) (malic enzyme) Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR015884 Malic enzyme, conserved site Protein Sequence Similarity - InterPro Domain: IPR015884
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001891 Malic oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR001891
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012302 Malic enzyme, NAD-binding Protein Sequence Similarity - InterPro Domain: IPR012302
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012301 Malic enzyme, N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR012301
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004931 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004931
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006108 malate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001891
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015884
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015884
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012301
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004470 malic enzyme activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001891
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012302
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000568 maeA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000113 maeA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020198 sfcA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001348 sfcA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003978 sfcA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005487 sfcA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001493 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010077 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001453 sfcA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007930 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005343 sfcA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005080 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078029 maeA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005257 sfcA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007973 sfcA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001726 maeA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006100 sfcA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003348 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005469 sfcA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009834 sfcA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008014 sfcA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007051 sfcA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006931 sfcA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006926 sfcA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011406 sfcA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008072 sfcA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008429 sfcA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007017 sfcA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007122 sfcA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008777 sfcA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026004 sfcA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007969 maeA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006240 sfcA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004931 maeA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001520 sfcA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001597 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001694 sfcA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132053 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002037 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001704 sfcA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063104 sfcA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001643 sfcA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000733 sfcA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004383 sfcA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005773 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001457 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001820 sfcA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006047 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004853 sfcA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004737 sfcA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004910 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006105 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005045 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005094 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004555 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005177 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006046 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004739 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001311 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001302 sfcA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001744 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006293 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005328 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005767 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005103 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0108116 sfcA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083195 sfcA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0095165 sfcA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007792 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005745 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007101 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001741 sfcA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007151 sfcA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004127 sfcA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072975 sfcA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088047 sfcA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001858 sfcA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001790 sfcA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000423 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008037 maeA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000548 maeA_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001342 sfcA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001344 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237594 sfcA1 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000982 sfcA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005640 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001796 sfcA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120289 sfcA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005646 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004401 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002289 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009058 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004937 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032391 sfcA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007793 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002967 sfcA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001751 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006603 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006446 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001598 sfcA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001941 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003038 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1637591 to 1649288
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001383fdnGCDSforward16360201639067Downstream
AEC-0001384fdnHCDSforward16390801639964Downstream
AEC-0001385fdnICDSforward16399571640610Downstream
AEC-0001386yddMCDScomplement16410171641301Downstream
AEC-0001387adhPCDScomplement16414471642457Downstream
AEC-0001388maeACDScomplement16425911644288Matches
AEC-0001389sraCDScomplement16444451644582Upstream
AEC-0001390bdmCDScomplement16446841644899Upstream
AEC-0001391osmCCDSforward16452441645675Upstream
AEC-0001392ddpFCDScomplement16457311646657Upstream
AEC-0001393ddpDCDScomplement16466501647636Upstream
AEC-0001394ddpCCDScomplement16476331648529Upstream
AEC-0001395ddpBCDScomplement16485261649548Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948