Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001392 (ddpF) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001392 showshow history
Names
ddpF ECDH10B_1614
Product
D-ala-D-ala transporter subunit; ATP-binding component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1645731 1646657 927 309
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR010066 (IPR010066 (DEPRECATED) Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal) Jul 2009
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Jul 2009
Automated Process Approved IPR013563 (IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal) Jul 2009
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0015833 peptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013563
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015197 (DEPRECATED) peptide transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ddpF Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004947
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1614 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product D-ala-D-ala transporter subunit; ATP-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR010066 (DEPRECATED) Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal Protein Sequence Similarity - InterPro Domain: IPR010066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013563
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004947 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004947
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0015833 peptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013563
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015197 (DEPRECATED) peptide transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004068 ddpF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004143 ddpF CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005491 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010081 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007926 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005348 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005069 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005252 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007977 CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006111 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003354 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005473 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009838 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008018 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007046 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006935 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006922 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011410 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008077 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008425 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007013 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007118 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008773 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026000 ddpF CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006244 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004947 ddpF CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001524 ddpF CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001602 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001689 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132057 ddpF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002031 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001737 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007155 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004132 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001855 CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088043 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001853 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001785 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1640731 to 1651657
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001386yddMCDScomplement16410171641301Downstream
AEC-0001387adhPCDScomplement16414471642457Downstream
AEC-0001388maeACDScomplement16425911644288Downstream
AEC-0001389sraCDScomplement16444451644582Downstream
AEC-0001390bdmCDScomplement16446841644899Downstream
AEC-0001391osmCCDSforward16452441645675Downstream
AEC-0001392ddpFCDScomplement16457311646657Matches
AEC-0001393ddpDCDScomplement16466501647636Overlaps Upstream
AEC-0001394ddpCCDScomplement16476331648529Upstream
AEC-0001395ddpBCDScomplement16485261649548Upstream
AEC-0001396ddpACDScomplement16495501651100Upstream
AEC-0001397ddpXCDScomplement16511141651695Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948