Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001394 (ddpC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001394 showshow history
Names
ddpC ECDH10B_1616
Product
D-ala-D-ala transporter subunit; membrane component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1647633 1648529 897 299
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ddpC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004953
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1616 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product D-ala-D-ala transporter subunit; membrane component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004953 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004953
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002116 ddpC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001668 ddpC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020010 gntN CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002659 yddQ CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005493 yddQ CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010083 yddQ CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007924 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005350 yddQ CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005067 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005250 yddQ CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007979 yddQ CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006113 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003356 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005475 yddQ CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009840 yddQ CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008020 yddQ CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007044 yddQ CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006937 yddQ CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006920 yddQ CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011412 yddQ CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008079 yddQ CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008423 yddQ CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007011 yddQ CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007116 yddQ CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008771 yddQ CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025998 ddpC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006246 yddQ CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004953 ddpC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001526 ddpC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001604 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001687 yddQ CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132059 ddpC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002029 CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064399 gntN CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002402 gntN CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001093 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002435 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001735 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007157 yddQ CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072968 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001851 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001783 ddpC CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001518 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000069 ddpC_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000541 ddpC_2 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002410 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1642633 to 1653529
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001388maeACDScomplement16425911644288Downstream
AEC-0001389sraCDScomplement16444451644582Downstream
AEC-0001390bdmCDScomplement16446841644899Downstream
AEC-0001391osmCCDSforward16452441645675Downstream
AEC-0001392ddpFCDScomplement16457311646657Downstream
AEC-0001393ddpDCDScomplement16466501647636Overlaps Downstream
AEC-0001394ddpCCDScomplement16476331648529Matches
AEC-0001395ddpBCDScomplement16485261649548Overlaps Upstream
AEC-0001396ddpACDScomplement16495501651100Upstream
AEC-0001397ddpXCDScomplement16511141651695Upstream
AEC-0001398dosCDScomplement16519531654352Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948