Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001395 (ddpB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001395 showshow history
Names
ddpB ECDH10B_1617
Product
D-ala-D-ala transporter subunit; membrane component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1648526 1649548 1023 341
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ddpB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004955
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1617 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product D-ala-D-ala transporter subunit; membrane component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004955 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004955
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004189 ddpB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004323 ddpB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020009 gntM CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005494 yddR CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010084 yddR CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007923 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005351 yddR CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005066 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005249 yddR CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007980 yddR CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006114 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003357 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005476 yddR CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009841 yddR CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008021 yddR CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007043 yddR CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006938 yddR CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006919 yddR CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011413 yddR CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008080 yddR CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008422 yddR CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007115 yddR CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008770 yddR CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025997 ddpB pseudogene
Automated Process Uncurated Go view Escherichia coli HS ADR-0006247 yddR CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004955 ddpB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001527 ddpB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001605 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001686 yddR CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132060 ddpB pseudogene
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002028 CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064400 gntM CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002379 gntM CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001094 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002436 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001734 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001782 ddpB CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235626 dppB1 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008165 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003534 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008417 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003910 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126955 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006345 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005832 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001393 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005821 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004173 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030370 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006575 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004998 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1643526 to 1654548
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001388maeACDScomplement16425911644288Downstream
AEC-0001389sraCDScomplement16444451644582Downstream
AEC-0001390bdmCDScomplement16446841644899Downstream
AEC-0001391osmCCDSforward16452441645675Downstream
AEC-0001392ddpFCDScomplement16457311646657Downstream
AEC-0001393ddpDCDScomplement16466501647636Downstream
AEC-0001394ddpCCDScomplement16476331648529Overlaps Downstream
AEC-0001395ddpBCDScomplement16485261649548Matches
AEC-0001396ddpACDScomplement16495501651100Upstream
AEC-0001397ddpXCDScomplement16511141651695Upstream
AEC-0001398dosCDScomplement16519531654352Upstream
AEC-0001399yddVCDScomplement16543771655759Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948