Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001396 (ddpA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001396 showshow history
Names
ddpA ECDH10B_1618
Product
D-ala-D-a la transporter subunit; periplasmic-binding component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1649550 1651100 1551 517
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000914 (IPR000914 Solute-binding protein family 5 domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000914
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000914
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ddpA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004958
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1618 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product D-ala-D-a la transporter subunit; periplasmic-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000914 Solute-binding protein family 5 domain Protein Sequence Similarity - InterPro Domain: IPR000914
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004958 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004958
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000914
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000914
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004148 ddpA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003853 ddpA CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005495 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010085 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007921 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005352 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005065 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005248 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007981 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005477 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009842 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008022 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007042 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006939 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006918 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011414 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008081 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008421 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007009 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007114 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008769 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025996 ddpA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006248 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004958 ddpA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001528 ddpA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001606 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001685 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132061 ddpA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002027 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001733 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007159 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004137 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001781 ddpA CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1644550 to 1656100
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001389sraCDScomplement16444451644582Downstream
AEC-0001390bdmCDScomplement16446841644899Downstream
AEC-0001391osmCCDSforward16452441645675Downstream
AEC-0001392ddpFCDScomplement16457311646657Downstream
AEC-0001393ddpDCDScomplement16466501647636Downstream
AEC-0001394ddpCCDScomplement16476331648529Downstream
AEC-0001395ddpBCDScomplement16485261649548Downstream
AEC-0001396ddpACDScomplement16495501651100Matches
AEC-0001397ddpXCDScomplement16511141651695Upstream
AEC-0001398dosCDScomplement16519531654352Upstream
AEC-0001399yddVCDScomplement16543771655759Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948