Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001397 (ddpX) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001397 showshow history
Names
ddpX ECDH10B_1619
Product
D-ala-D-ala dipeptidase, Zn-dependent
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1651114 1651695 582 194
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000755 (IPR000755 D-alanyl-D-alanine dipeptidase) Jul 2009
Automated Process Approved IPR009045 (IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000755
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005618 cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000755
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016805 dipeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000755
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008237 metallopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000755
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ddpX Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004960
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1619 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product D-ala-D-ala dipeptidase, Zn-dependent Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000755 D-alanyl-D-alanine dipeptidase Protein Sequence Similarity - InterPro Domain: IPR000755
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR009045
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004960 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004960
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000755
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005618 cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000755
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016805 dipeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000755
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008237 metallopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000755
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003241 ddpX CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003322 ddpX CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002856 ddpX CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005496 ddpX CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010086 ddpX CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007920 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005353 ddpX CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005064 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005247 ddpX CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007982 ddpX CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006116 ddpX CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003359 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005478 ddpX CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009843 ddpX CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008023 ddpX CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007041 ddpX CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006940 ddpX CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006917 ddpX CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011415 ddpX CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008082 ddpX CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008420 ddpX CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007008 ddpX CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007113 ddpX CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008768 ddpX CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025995 ddpX CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006249 ddpX CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004960 ddpX CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001529 ddpX CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001607 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001684 ddpX CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132062 ddpX CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002026 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001732 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007160 ddpX CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001780 ddpX CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1646114 to 1656695
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001392ddpFCDScomplement16457311646657Downstream
AEC-0001393ddpDCDScomplement16466501647636Downstream
AEC-0001394ddpCCDScomplement16476331648529Downstream
AEC-0001395ddpBCDScomplement16485261649548Downstream
AEC-0001396ddpACDScomplement16495501651100Downstream
AEC-0001397ddpXCDScomplement16511141651695Matches
AEC-0001398dosCDScomplement16519531654352Upstream
AEC-0001399yddVCDScomplement16543771655759Upstream
AEC-0001400yddWCDScomplement16561231657442Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948