Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001401 (gadC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001401 showshow history
Names
gadC ECDH10B_1623
Product
predicted glutamate:gamma-aminobutyric acid antiporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1657573 1659108 1536 512
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004759 (IPR004759 Glutamate:g-aminobutyrate antiporter) Jul 2009
Automated Process Approved IPR002293 (IPR002293 Amino acid/polyamine transporter I) Jul 2009
Automated Process Approved IPR004841 (IPR004841 Amino acid permease/ SLC12A domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004759
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004841
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004759
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015171 amino acid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gadC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004973
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1623 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted glutamate:gamma-aminobutyric acid antiporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004759 Glutamate:g-aminobutyrate antiporter Protein Sequence Similarity - InterPro Domain: IPR004759
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002293 Amino acid/polyamine transporter I Protein Sequence Similarity - InterPro Domain: IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004841 Amino acid permease/ SLC12A domain Protein Sequence Similarity - InterPro Domain: IPR004841
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004973 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004973
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004841
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004759
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004759
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015171 amino acid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002794 gadC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002981 gadC CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003971 gadC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005500 gadC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001500 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010090 gadC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001458 xasA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007915 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005357 gadC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005060 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078037 gadC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005243 gadC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007986 gadC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001732 gadC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006120 gadC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003364 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005483 gadC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009848 gadC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008028 gadC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007037 gadC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006945 gadC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006913 gadC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011420 gadC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008087 gadC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008415 gadC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007003 gadC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007108 gadC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008763 gadC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025990 gadC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007960 gadC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006253 gadC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004973 gadC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001533 gadC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001611 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001680 gadC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132067 gadC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002021 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001713 xasA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001727 xasA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007164 gadC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004144 gadC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001858 xasA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072963 xasA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088039 xasA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001846 xasA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001776 gadC CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1652573 to 1664108
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001398dosCDScomplement16519531654352Downstream
AEC-0001399yddVCDScomplement16543771655759Downstream
AEC-0001400yddWCDScomplement16561231657442Downstream
AEC-0001401gadCCDScomplement16575731659108Matches
AEC-0001402gadBCDScomplement16592641660664Upstream
AEC-0001403pqqLCDScomplement16610261663821Upstream
AEC-0001404yddBCDScomplement16638661666238Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948