Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001402 (gadB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001402 showshow history
Names
gadB ECDH10B_1624
Product
glutamate decarboxylase B, PLP-dependent
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1659264 1660664 1401 467
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR010107 (IPR010107 Glutamate decarboxylase) Jul 2009
Automated Process Approved IPR002129 (IPR002129 Pyridoxal phosphate-dependent decarboxylase) Jul 2009
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Jul 2009
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006536 glutamate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010107
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0019752 carboxylic acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002129
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016831 carboxy-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002129
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004351 glutamate decarboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010107
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010107
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gadB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004976
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1624 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product glutamate decarboxylase B, PLP-dependent Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR010107 Glutamate decarboxylase Protein Sequence Similarity - InterPro Domain: IPR010107
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002129 Pyridoxal phosphate-dependent decarboxylase Protein Sequence Similarity - InterPro Domain: IPR002129
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004976 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004976
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0019752 carboxylic acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002129
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006536 glutamate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010107
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010107
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016831 carboxy-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002129
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004351 glutamate decarboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010107
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002287 gadB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002668 gadB CDS
Ortholog
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004976 gadB CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1654264 to 1665664
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001398dosCDScomplement16519531654352Downstream
AEC-0001399yddVCDScomplement16543771655759Downstream
AEC-0001400yddWCDScomplement16561231657442Downstream
AEC-0001401gadCCDScomplement16575731659108Downstream
AEC-0001402gadBCDScomplement16592641660664Matches
AEC-0001403pqqLCDScomplement16610261663821Upstream
AEC-0001404yddBCDScomplement16638661666238Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948