Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001420 (lsrC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001420 showshow history
Names
lsrC ECDH10B_1645
Product
AI2 transporter; membrane component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1690668 1691696 1029 343
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001851 (IPR001851 ABC transporter, permease) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name lsrC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005059
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1645 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product AI2 transporter; membrane component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001851 ABC transporter, permease Protein Sequence Similarity - InterPro Domain: IPR001851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0005059 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005059
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002816 lsrC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003006 lsrC CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005544 lsrC CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010113 ydeY CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007886 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005379 lsrC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005036 LsrC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005205 lsrC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008012 lsrC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003389 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005505 lsrC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009870 lsrC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008051 lsrC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007014 lsrC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006967 lsrC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006890 lsrC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011444 lsrC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008110 lsrC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008393 lsrC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006982 lsrC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007085 lsrC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008741 lsrC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025964 lsrC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006272 lsrC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0005059 lsrC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001554 lsrC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001633 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001657 lsrC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132091 lsrC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000698 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008485 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004654 lsrC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008716 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012762 ydeY CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010185 ydeY CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007472 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008762 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007811 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007676 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007372 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007874 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008753 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008658 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003956 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003915 lsrC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005070 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008898 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006680 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008355 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006947 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113012 lsrC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085267 lsrC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102557 lsrC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005082 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007818 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005959 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004202 lsrC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072801 lsrC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087899 lsrC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001671 ydeY CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000008 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001597 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003249 lsrC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002200 lsrC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002839 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243379 lsrC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004964 lsrC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004624 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005827 lsrC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002902 lsrC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116698 lsrC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005305 lsrC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007564 lsrC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003927 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005707 lsrC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007330 lsrC CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033554 lsrC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004715 lsrC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000359 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003855 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006840 lsrC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007540 lsrC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000590 lsrC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000679 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004332 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1685668 to 1696696
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004531pseudogenecomplement16803141685735Upstream
AEC-0001416ydeKCDSpcomplement16817581685735Upstream
AEC-0001417lsrKCDScomplement16862661687858Upstream
AEC-0001418lsrRCDScomplement16879371688890Upstream
AEC-0001419lsrACDSforward16891391690674Overlaps Upstream
AEC-0001420lsrCCDSforward16906681691696Matches
AEC-0001421lsrDCDSforward16916961692688Overlaps Downstream
AEC-0001422lsrBCDSforward16927001693722Downstream
AEC-0001423lsrFCDSforward16937491694624Downstream
AEC-0001424lsrGCDSforward16946481694938Downstream
AEC-0001425tamCDSforward16949951695753Downstream
AEC-0001426yneECDScomplement16957571696671Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948