Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001433 (ydeA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001433 showshow history
Names
ydeA ECDH10B_1659
Product
predicted arabinose transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1704677 1705867 1191 397
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011701 (IPR011701 Major facilitator superfamily) Jul 2009
Automated Process Approved IPR016196 (IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ydeA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005103
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1659 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted arabinose transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR011701 Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR011701
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter Protein Sequence Similarity - InterPro Domain: IPR016196
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0005103 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005103
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002318 ydeA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002185 ydeA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020022 sotB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001757 sotB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003952 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005559 sotB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001523 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010128 sotB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001485 sotB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007871 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005394 sotB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005019 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078065 sotB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005190 sotB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008029 sotB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001762 ydeA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006168 sotB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003404 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005521 sotB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009885 sotB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008066 sotB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006999 sotB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006982 sotB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006875 sotB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011459 sotB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008125 sotB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008378 sotB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006967 sotB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007070 sotB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008727 sotB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025947 ydeA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009412 sotB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006286 sotB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0005103 ydeA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001568 ydeA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001647 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001641 sotB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132105 ydeA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000681 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001754 sotB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064647 sotB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002548 sotB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002268 sotB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000688 sotB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005822 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001516 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001790 ydeA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006083 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004969 ydeA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004830 ydeA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004954 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006057 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004994 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005043 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004504 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005125 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006002 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004784 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001342 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001333 ydeA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001793 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006245 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005379 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005714 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005045 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0108183 CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083157 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0095047 ydeA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007840 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005701 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007054 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001822 ydeA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007087 sotB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004184 sotB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001842 ydeA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072781 ydeA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087883 ydeA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001692 ydeA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001735 ydeA CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1699677 to 1710867
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001428yneGCDScomplement16996151699974Upstream
AEC-0001429yneHCDScomplement16999741700900Upstream
AEC-0001430yneICDScomplement17009641702352Upstream
AEC-0001431yneJCDSforward17024531703334Upstream
AEC-0001432yneKCDSforward17034121704527Upstream
AEC-0001433ydeACDSforward17046771705867Matches
AEC-0001434marCCDScomplement17058921706557Downstream
AEC-0001435marRCDSforward17067691707203Downstream
AEC-0001436marACDSforward17072231707606Downstream
AEC-0001437marBCDSforward17076381707856Downstream
AEC-0001438eamACDScomplement17078871708786Downstream
AEC-0001439ydeECDSforward17089811710168Downstream
AEC-0001440ydeHCDScomplement17106091711499Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948