Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001438 (eamA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001438 showshow history
Names
eamA ECDH10B_1664
Product
cysteine and O-acetyl-L-serine efflux system
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1707887 1708786 900 300
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000620 (IPR000620 EamA domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000620
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name eamA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005116
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1664 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product cysteine and O-acetyl-L-serine efflux system Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000620 EamA domain Protein Sequence Similarity - InterPro Domain: IPR000620
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0005116 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005116
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000620
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002585 eamA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002416 eamA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017608 eamA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003940 eamA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005564 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001531 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001495 ydeD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007865 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005404 eamA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005007 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078076 ydeD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005178 eamA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008042 eamA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001767 eamA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006179 eamA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003409 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005526 eamA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009890 eamA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008071 eamA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006994 eamA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006987 eamA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006870 eamA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011464 eamA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008130 eamA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008373 eamA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006962 eamA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007065 eamA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025942 ydeD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009404 eamA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006297 eamA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0005116 eamA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001573 eamA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001658 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001630 eamA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132110 eamA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000676 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001765 ydeD CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064722 eamA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002908 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002287 eamA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005827 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001785 ydeD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006088 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004985 ydeD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004845 ydeD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004959 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006052 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004989 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005038 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004499 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005120 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005997 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004789 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001798 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006240 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005384 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005709 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005040 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0108193 CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083152 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0095032 ydeD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007845 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005696 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007049 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001837 ydeD CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072776 ydeD CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087878 ydeD CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001697 ydeD CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010616 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002272 eamA CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1702887 to 1713786
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001431yneJCDSforward17024531703334Downstream
AEC-0001432yneKCDSforward17034121704527Downstream
AEC-0001433ydeACDSforward17046771705867Downstream
AEC-0001434marCCDScomplement17058921706557Downstream
AEC-0001435marRCDSforward17067691707203Downstream
AEC-0001436marACDSforward17072231707606Downstream
AEC-0001437marBCDSforward17076381707856Downstream
AEC-0001438eamACDScomplement17078871708786Matches
AEC-0001439ydeECDSforward17089811710168Upstream
AEC-0001440ydeHCDScomplement17106091711499Upstream
AEC-0001441ydeICDScomplement17117541712146Upstream
AEC-0001442ydeJCDSforward17124221712940Upstream
AEC-0001443dcpCDScomplement17129841715029Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948