Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001490 (ynfF) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001490 showshow history
Names
ynfF ECDH10B_1721
Product
oxidoreductase subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1749541 1751964 2424 808
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006311 (IPR006311 Twin-arginine translocation pathway, signal sequence) Jul 2009
Automated Process Approved IPR011888 (IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE) Jul 2009
Automated Process Approved IPR006655 (IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site) Jul 2009
Automated Process Approved IPR009010 (IPR009010 Aspartate decarboxylase-like domain superfamily) Jul 2009
Automated Process Approved IPR006963 (IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain) Jul 2009
Automated Process Approved IPR006656 (IPR006656 Molybdopterin oxidoreductase) Jul 2009
Automated Process Approved IPR006657 (IPR006657 Molybdopterin dinucleotide-binding domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006655
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009010
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006655
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011888
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030151 molybdenum ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011888
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009389 dimethyl sulfoxide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011888
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ynfF Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005307
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1721 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product oxidoreductase subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE Protein Sequence Similarity - InterPro Domain: IPR011888
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site Protein Sequence Similarity - InterPro Domain: IPR006655
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR009010 Aspartate decarboxylase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR009010
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006657 Molybdopterin dinucleotide-binding domain Protein Sequence Similarity - InterPro Domain: IPR006657
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006656 Molybdopterin oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR006656
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain Protein Sequence Similarity - InterPro Domain: IPR006963
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006311 Twin-arginine translocation pathway, signal sequence Protein Sequence Similarity - InterPro Domain: IPR006311
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0005307 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005307
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011888
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030151 molybdenum ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011888
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006655
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006655
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009010
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009389 dimethyl sulfoxide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011888
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000011 dmsA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000013 ynfE CDS
Ortholog
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0005307 ynfF CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1744541 to 1756964
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001484ynfACDScomplement17443321744658Upstream
AEC-0001485ynfBCDSforward17447931745134Upstream
AEC-0001486speGCDSforward17451691745729Upstream
AEC-0001487ynfCCDScomplement17457321746442Upstream
AEC-0001488ynfDCDSforward17465501746855Upstream
AEC-0001489ynfECDSforward17470541749480Upstream
AEC-0001490ynfFCDSforward17495411751964Matches
AEC-0001491ynfGCDSforward17519751752592Downstream
AEC-0001492ynfHCDSforward17525941753448Downstream
AEC-0001493dmsDCDSforward17534911754105Downstream
AEC-0001494clcBCDSforward17543001755556Downstream
AEC-0001495ynfKCDScomplement17555091756204Downstream
AEC-0001496dgsACDScomplement17563291757549Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948