Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001491 (ynfG) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001491 showshow history
Names
ynfG ECDH10B_1722
Product
oxidoreductase, Fe-S subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1751975 1752592 618 206
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR014297 (IPR014297 Dimethylsulphoxide reductase, chain B) Jul 2009
Automated Process Approved IPR001450 (IPR001450 (DEPRECATED) 4Fe-4S binding domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ynfG Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005309
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1722 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product oxidoreductase, Fe-S subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR014297 Dimethylsulphoxide reductase, chain B Protein Sequence Similarity - InterPro Domain: IPR014297
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001450 (DEPRECATED) 4Fe-4S binding domain Protein Sequence Similarity - InterPro Domain: IPR001450
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0005309 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005309
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004022 ynfG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000103 ynfG CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004132 dmsB_1 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005618 dmsB_1 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010154 dmsB_2 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001512 dmsB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007771 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005425 dmsB_1 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006051 pseudogene
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078094 ynfG CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005100 dmsB_1 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008701 dmsB_1 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001787 ynfG CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006233 dmsB2 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001769 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005677 dmsB_2 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009985 dmsB_2 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009930 dmsB_1 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008703 dmsB_1 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007138 dmsB_2 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008419 dmsB_1 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010970 dmsB_2 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009400 dmsB_1 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0011044 dmsB_1 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009271 dmsB_1 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008561 dmsB_1 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009688 dmsB_1 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026376 ynfG CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006337 dmsB1 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0005309 ynfG CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001631 ynfG CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001739 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001610 dmsB_1 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132276 ynfG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004290 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001783 ynfG CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001807 ynfG CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072828 ynfG CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0255988 ynfG CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001711 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001707 ynfG CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1746975 to 1757592
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001489ynfECDSforward17470541749480Upstream
AEC-0001490ynfFCDSforward17495411751964Upstream
AEC-0001491ynfGCDSforward17519751752592Matches
AEC-0001492ynfHCDSforward17525941753448Downstream
AEC-0001493dmsDCDSforward17534911754105Downstream
AEC-0001494clcBCDSforward17543001755556Downstream
AEC-0001495ynfKCDScomplement17555091756204Downstream
AEC-0001496dgsACDScomplement17563291757549Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948