Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001494 (clcB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001494 showshow history
Names
clcB ECDH10B_1725
Product
predicted voltage-gated chloride channel
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1754300 1755556 1257 419
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR014743 (IPR014743 Chloride channel, core) Jul 2009
Automated Process Approved IPR001807 (IPR001807 Chloride channel, voltage gated) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006821 chloride transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001807
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001807
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005247 voltage-gated chloride channel activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001807
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005216 ion channel activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014743
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name clcB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005317
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1725 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted voltage-gated chloride channel Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR014743 Chloride channel, core Protein Sequence Similarity - InterPro Domain: IPR014743
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001807 Chloride channel, voltage gated Protein Sequence Similarity - InterPro Domain: IPR001807
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0005317 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005317
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006821 chloride transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001807
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001807
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005247 voltage-gated chloride channel activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001807
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005216 ion channel activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014743
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002426 clcB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002708 clcB CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004135 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005621 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001548 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001515 ynfJ CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007767 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005428 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006048 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078098 clcB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005097 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008704 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001790 clcB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006236 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001772 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005681 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009989 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009933 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008700 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007142 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008422 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010967 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009397 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0011041 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009267 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008564 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009691 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026379 clcB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009619 clcB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006341 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0005317 clcB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001634 clcB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001742 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001607 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132279 clcB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004287 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001786 ynfJ CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005856 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001545 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006119 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005086 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004934 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004990 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006023 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004959 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005007 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004470 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005090 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005968 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004819 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001832 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006211 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005679 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005011 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0108255 clcB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083125 clcB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094961 clcB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007875 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005667 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008524 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001702 clcB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007187 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004240 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001804 clcB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072831 clcB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087925 clcB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001714 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001704 clcB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003517 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005970 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002982 clcB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000617 clcB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000419 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239238 eriC2 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004767 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001188 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122825 clcB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007088 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007650 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001005 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007440 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005956 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031819 clcB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005704 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002097 clcB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001030 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005838 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002276 clcB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002687 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002342 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1749300 to 1760556
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001489ynfECDSforward17470541749480Upstream
AEC-0001490ynfFCDSforward17495411751964Upstream
AEC-0001491ynfGCDSforward17519751752592Upstream
AEC-0001492ynfHCDSforward17525941753448Upstream
AEC-0001493dmsDCDSforward17534911754105Upstream
AEC-0001494clcBCDSforward17543001755556Matches
AEC-0001495ynfKCDScomplement17555091756204Overlaps Downstream
AEC-0001496dgsACDScomplement17563291757549Downstream
AEC-0001497ynfLCDScomplement17576841758577Downstream
AEC-0001498ynfMCDSforward17586841759937Downstream
AEC-0001499asrCDSforward17603611760669Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948