Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001501 (mdtI) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001501 showshow history
Names
mdtI ECDH10B_1732
Product
multidrug efflux system transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1761805 1762134 330 110
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000390 (IPR000390 Small multidrug resistance protein family) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000390
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name mdtI Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005343
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1732 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product multidrug efflux system transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000390 Small multidrug resistance protein family Protein Sequence Similarity - InterPro Domain: IPR000390
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0005343 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005343
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000390
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002048 mdtI CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002089 mdtI CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000529 mdtI CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004144 mdtI CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005629 mdtI CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001555 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010165 mdtI CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001522 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007758 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005435 mdtI CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006041 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078106 mdtI CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005090 mdtI CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008712 mdtI CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001798 mdtI CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006243 mdtI CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001779 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005688 mdtI CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009996 mdtI CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009940 mdtI CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008693 mdtI CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007149 mdtI CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008429 mdtI CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010960 mdtI CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009390 mdtI CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010551 mdtI CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009260 mdtI CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008571 mdtI CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009698 mdtI CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026386 mdtI CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009611 mdtI CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006348 mdtI CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0005343 mdtI CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001641 mdtI CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001749 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001599 mdtI CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132286 mdtI CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004280 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001794 ydgE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005864 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001552 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001743 ydgE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006127 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005113 mdtI CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004998 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006015 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004951 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004998 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004462 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005082 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005960 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004827 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001841 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006203 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006780 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005671 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005003 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0108274 CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083117 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094946 ydgE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007883 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005660 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008516 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001695 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007194 mdtI CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004248 mdtI CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001792 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072838 CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087931 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001721 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001690 mdtI CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000601 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006856 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002659 emrE2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002507 emrE2 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001521 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238879 emrE2 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006521 mdtI CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001763 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004562 mdtI CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001372 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122143 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005498 mdtI CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008753 mdtI CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001110 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008152 mdtI CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005797 mdtI CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031955 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005909 mdtI CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001871 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001249 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007680 mdtI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005990 mdtI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002134 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002511 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002518 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1756805 to 1767134
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001496dgsACDScomplement17563291757549Downstream
AEC-0001497ynfLCDScomplement17576841758577Downstream
AEC-0001498ynfMCDSforward17586841759937Downstream
AEC-0001499asrCDSforward17603611760669Downstream
AEC-0001500ydgDCDSforward17609451761766Downstream
AEC-0001501mdtICDScomplement17618051762134Matches
AEC-0001502mdtJCDScomplement17621211762486Overlaps Upstream
AEC-0001503tqsACDSforward17628981763932Upstream
AEC-0001504pntBCDScomplement17639571765345Upstream
AEC-0001505pntACDScomplement17653561766888Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948