Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001502 (mdtJ) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001502 showshow history
Names
mdtJ ECDH10B_1733
Product
multidrug efflux system transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1762121 1762486 366 122
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000390 (IPR000390 Small multidrug resistance protein family) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000390
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name mdtJ Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005345
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1733 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product multidrug efflux system transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000390 Small multidrug resistance protein family Protein Sequence Similarity - InterPro Domain: IPR000390
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0005345 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005345
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000390
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002027 mdtJ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002061 mdtJ CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000530 mdtJ CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004145 mdtJ CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005630 mdtJ CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001556 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010166 mdtJ CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001523 ydgF CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007757 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005436 mdtJ CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006040 MdtJ CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078107 mdtJ CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005089 mdtJ CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008713 mdtJ CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001799 mdtJ CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006244 mdtJ CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001780 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005689 mdtJ CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009997 mdtJ CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009941 mdtJ CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008692 mdtJ CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007150 mdtJ CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008430 mdtJ CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010959 mdtJ CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009389 mdtJ CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010552 mdtJ CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009259 mdtJ CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008572 mdtJ CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009699 mdtJ CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026387 mdtJ CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009610 mdtJ CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006349 mdtJ CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0005345 mdtJ CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001642 mdtJ CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001750 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001598 mdtJ CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132287 mdtJ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004279 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001795 ydgF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005865 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001553 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001742 ydgF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006128 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005116 mdtJ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004999 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006014 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004950 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004997 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004461 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005081 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005959 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004828 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001380 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001372 ydgF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001842 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006202 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006781 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005670 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005002 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0108276 CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083116 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094943 ydgF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007884 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005659 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008515 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001694 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007195 mdtJ CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004249 mdtJ CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001791 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072839 CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087932 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001722 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001689 mdtJ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000602 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006860 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002658 mdtJ CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002508 mdtJ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001522 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238878 emrE1 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006522 mdtJ CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001762 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004561 mdtJ CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001373 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122136 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005497 mdtJ CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008754 mdtJ CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008153 mdtJ CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005798 mdtJ CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031956 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005910 mdtJ CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001870 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001251 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007681 mdtJ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005991 mdtJ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002133 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002510 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002520 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1757121 to 1767486
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001496dgsACDScomplement17563291757549Downstream
AEC-0001497ynfLCDScomplement17576841758577Downstream
AEC-0001498ynfMCDSforward17586841759937Downstream
AEC-0001499asrCDSforward17603611760669Downstream
AEC-0001500ydgDCDSforward17609451761766Downstream
AEC-0001501mdtICDScomplement17618051762134Overlaps Downstream
AEC-0001502mdtJCDScomplement17621211762486Matches
AEC-0001503tqsACDSforward17628981763932Upstream
AEC-0001504pntBCDScomplement17639571765345Upstream
AEC-0001505pntACDScomplement17653561766888Upstream
AEC-0001506ydgHCDSforward17674121768356Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948