Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001524 (malY) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001524 showshow history
Names
malY ECDH10B_1755
Product
bifunctional beta-cystathionase, PLP-dependent and regulator of maltose regulon
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1789942 1791114 1173 391
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004839 (IPR004839 Aminotransferase, class I/classII) Jul 2009
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Jul 2009
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016769 transferase activity, transferring nitrogenous groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name malY Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005432
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1755 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product bifunctional beta-cystathionase, PLP-dependent and regulator of maltose regulon Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004839 Aminotransferase, class I/classII Protein Sequence Similarity - InterPro Domain: IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0005432 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005432
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016769 transferase activity, transferring nitrogenous groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000082 malY CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000073 malY CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004166 malY CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005652 malY CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001578 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010188 malY CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001545 malY CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007728 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005458 malY CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006018 malY pseudogene
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078129 malY CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008819 malY CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008735 malY CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001821 malY CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006267 malY CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001805 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005713 malY CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010021 malY CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009965 malY CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008670 malY CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007174 malY CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008452 malY CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010934 malY CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009363 malY CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010576 malY CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009234 malY CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008596 malY CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009723 malY CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026411 malY CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008632 patB_1 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006372 malY CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0005432 malY CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001664 malY CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001772 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001576 malY CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132311 malY CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004255 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001817 malY CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001572 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004976 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005649 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004981 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001669 malY CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007219 malY CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004289 malY CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002133 malY CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072867 malY CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087957 malY CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001747 malY CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001664 malY CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002782 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005918 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003001 malY CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000603 malY CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000406 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005828 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002284 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002704 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002328 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1784942 to 1796114
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001519uidACDScomplement17832451785056Upstream
AEC-0001520uidRCDScomplement17854471786037Upstream
AEC-0001521hdhACDScomplement17862581787025Upstream
AEC-0001522malICDScomplement17871371788165Upstream
AEC-0001523malXCDSforward17883401789932Upstream
AEC-0001524malYCDSforward17899421791114Matches
AEC-0001525addCDSforward17912181792219Downstream
AEC-0001526ydgJCDScomplement17922531793293Downstream
AEC-0001527ydgTCDSforward17935441793759Downstream
AEC-0001528ydgKCDSforward17938451794285Downstream
AEC-0001529rsxACDSforward17943621794943Downstream
AEC-0001530rsxBCDSforward17949431795521Downstream
AEC-0001531rsxCCDSforward17955141797736Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948