Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001536 (tppB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001536 showshow history
Names
tppB ECDH10B_1768
Product
predicted transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1801364 1802866 1503 501
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005279 (IPR005279 Dipeptide/tripeptide permease) Jul 2009
Automated Process Approved IPR000109 (IPR000109 Proton-dependent oligopeptide transporter family) Jul 2009
Automated Process Approved IPR000560 (IPR000560 Histidine phosphatase superfamily, clade-2) Jul 2009
Automated Process Approved IPR016196 (IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006857 oligopeptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003993 acid phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000560
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name tppB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005469
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1768 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR005279 Dipeptide/tripeptide permease Protein Sequence Similarity - InterPro Domain: IPR005279
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000109 Proton-dependent oligopeptide transporter family Protein Sequence Similarity - InterPro Domain: IPR000109
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000560 Histidine phosphatase superfamily, clade-2 Protein Sequence Similarity - InterPro Domain: IPR000560
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter Protein Sequence Similarity - InterPro Domain: IPR016196
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0005469 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005469
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006857 oligopeptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003993 acid phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000560
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001856 tppB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001808 dtpA CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001844 tppB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004179 tppB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005664 tppB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001591 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010201 tppB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001557 ydgR CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007711 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005471 tppB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006005 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078141 tppB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008832 tppB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008748 tppB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001836 tppB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006281 tppB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001817 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005725 tppB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010033 tppB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009977 tppB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008657 tppB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007186 tppB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008465 tppB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010921 tppB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009351 tppB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010588 tppB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009221 tppB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008609 tppB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009736 tppB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026423 tppB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008619 dtpA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006385 tppB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0005469 dtpA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001677 ydgR CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001786 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001564 tppB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132324 tppB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004243 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001832 ydgR CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062547 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004334 tppB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002876 tppB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000570 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005896 tppB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001589 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001703 tppB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006159 tppB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005226 ydgR CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005057 ydgR CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008931 tppB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005985 tppB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004921 tppB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004963 tppB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004430 tppB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005050 tppB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005929 tppB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004860 tppB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001411 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001401 tppB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001880 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006172 tppB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006812 tppB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005636 tppB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004968 tppB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0108406 tppB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083034 tppB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094860 tppB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007915 tppB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005627 tppB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008346 tppB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001657 ydgR CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007233 tppB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004302 tppB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002145 ydgR CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072880 tppB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087969 tppB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001759 ydgR CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001652 tppB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000525 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006259 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000936 tppB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000718 tppB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002032 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239426 tppB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006662 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002067 tppB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004852 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001099 tppB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123103 tppB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007006 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006710 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002263 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007904 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006104 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031673 tppB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008093 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002195 tppB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000928 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007006 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005748 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002362 tppB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002805 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002225 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1796364 to 1807866
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001531rsxCCDSforward17955141797736Upstream
AEC-0001532rsxDCDSforward17977371798795Upstream
AEC-0001533rsxGCDSforward17987991799419Upstream
AEC-0001534rsxECDSforward17994231800118Upstream
AEC-0001535nthCDSforward18001181800753Upstream
AEC-0001536tppBCDSforward18013641802866Matches
AEC-0001537gstCDSforward18029721803577Downstream
AEC-0001538pdxYCDScomplement18036211804484Downstream
AEC-0001539tyrSCDScomplement18045431805817Downstream
AEC-0001540pdxHCDScomplement18059461806602Downstream
AEC-0001541ydhACDScomplement18066611806990Downstream
AEC-0001542anmKCDScomplement18070881808197Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948