Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001539 (tyrS) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001539 showshow history
Names
tyrS ECDH10B_1771
Product
tyrosyl-tRNA synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1804543 1805817 1275 425
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002942 (IPR002942 RNA-binding S4 domain) Jul 2009
Automated Process Approved IPR002307 (IPR002307 Tyrosine-tRNA ligase) Jul 2009
Automated Process Approved IPR002305 (IPR002305 Aminoacyl-tRNA synthetase, class Ic) Jul 2009
Automated Process Approved IPR001412 (IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site) Jul 2009
Automated Process Approved IPR014729 (IPR014729 Rossmann-like alpha/beta/alpha sandwich fold) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002307
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002305
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006437 tyrosyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002307
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002307
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002305
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002307
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003723 RNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002942
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002307
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004831 tyrosine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002307
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name tyrS Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005477
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1771 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product tyrosyl-tRNA synthetase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR002307 Tyrosine-tRNA ligase Protein Sequence Similarity - InterPro Domain: IPR002307
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002942 RNA-binding S4 domain Protein Sequence Similarity - InterPro Domain: IPR002942
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002305 Aminoacyl-tRNA synthetase, class Ic Protein Sequence Similarity - InterPro Domain: IPR002305
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Protein Sequence Similarity - InterPro Domain: IPR001412
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Protein Sequence Similarity - InterPro Domain: IPR014729
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0005477 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005477
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002305
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002307
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006437 tyrosyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002307
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002307
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002305
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003723 RNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002942
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002307
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004831 tyrosine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002307
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002307
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000519 tyrS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000399 tyrS CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0014601 tyrS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001847 tyrS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004182 tyrS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005667 tyrS CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010204 tyrS CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001560 tyrS CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007708 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005474 tyrS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006002 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078144 tyrS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008835 tyrS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008751 tyrS CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001839 tyrS CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006284 tyrS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001820 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005728 tyrS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010036 tyrS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009980 tyrS CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007189 tyrS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008468 tyrS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010918 tyrS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010591 tyrS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009739 tyrS CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026426 tyrS CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008616 tyrS CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006388 tyrS CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0005477 tyrS CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001680 tyrS CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001789 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001561 tyrS CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132327 tyrS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004240 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001835 tyrS CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062197 tyrS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001006 tyrS CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000502 tyrS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002763 tyrS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005899 tyrS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001594 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001700 tyrS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006163 tyrS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005237 tyrS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005068 tyrS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008934 tyrS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005982 tyrS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004918 tyrS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004960 tyrS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004427 tyrS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005047 tyrS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005926 tyrS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004863 tyrS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001414 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001404 tyrS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001883 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006169 tyrS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006815 tyrS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005633 tyrS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004965 tyrS CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0108414 tyrS CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083031 tyrS CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094852 tyrS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007918 tyrS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005624 tyrS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008343 tyrS CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001654 tyrS CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007238 tyrS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007086 tyrS CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002148 tyrS CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072883 tyrS CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087972 tyrS CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001762 tyrS CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001646 tyrS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000530 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006272 tyrS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000928 tyrS CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000723 tyrS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002038 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239450 tyrS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006668 tyrS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002072 tyrS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004857 tyrS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001092 tyrS CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123144 tyrS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007001 tyrS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006715 tyrS CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002257 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007896 tyrS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006109 tyrS CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031668 tyrS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008085 tyrS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002200 tyrS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000923 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007001 tyrS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005743 tyrS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002367 tyrS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002810 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002220 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1799543 to 1810817
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001534rsxECDSforward17994231800118Downstream
AEC-0001535nthCDSforward18001181800753Downstream
AEC-0001536tppBCDSforward18013641802866Downstream
AEC-0001537gstCDSforward18029721803577Downstream
AEC-0001538pdxYCDScomplement18036211804484Downstream
AEC-0001539tyrSCDScomplement18045431805817Matches
AEC-0001540pdxHCDScomplement18059461806602Upstream
AEC-0001541ydhACDScomplement18066611806990Upstream
AEC-0001542anmKCDScomplement18070881808197Upstream
AEC-0001543slyBCDSforward18084711808938Upstream
AEC-0001544slyACDScomplement18089851809419Upstream
AEC-0001545ydhJCDSforward18098591810716Upstream
AEC-0001546ydhKCDSforward18107161812728Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948