Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001547 (sodC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001547 showshow history
Names
sodC ECDH10B_1780
Product
superoxide dismutase, Cu, Zn
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1812729 1813250 522 174
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001424 (IPR001424 Superoxide dismutase, copper/zinc binding domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006801 superoxide metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001424
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001424
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name sodC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005505
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1780 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product superoxide dismutase, Cu, Zn Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001424 Superoxide dismutase, copper/zinc binding domain Protein Sequence Similarity - InterPro Domain: IPR001424
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0005505 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005505
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006801 superoxide metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001424
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001424
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000099 sodC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000854 sodC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017092 sodC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005677 sodC_1 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001604 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010215 sodC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001568 sodC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007695 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005483 sodC_1 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005991 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078153 sodC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008843 sodC_1 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008760 sodC_1 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001848 sodC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006294 sodC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006136 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005737 sodC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010045 sodC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010432 sodC_1 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010453 sodC_1 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007198 sodC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008477 sodC_1 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010909 sodC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010600 sodC_1 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010718 sodC_1 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009748 sodC_1 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026435 sodC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008607 sodC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006398 sodC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0005505 sodC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001689 sodC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001798 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001551 sodC_1 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132336 sodC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004231 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001844 sodC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062473 sodC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001349 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003865 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005908 sodC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001603 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001692 sodC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006172 sodC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005267 sodC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005096 sodC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0009036 sodC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005973 sodC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004909 sodC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004951 sodC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004418 sodC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005038 sodC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005917 sodC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004872 sodC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001423 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001413 sodC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001892 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006160 sodC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006824 sodC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005624 sodC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004956 sodC CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0108431 sodC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083022 sodC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094829 sodCII CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007927 sodC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005615 sodC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008334 sodC CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001646 sodC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007247 sodC_1 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007095 sodC_1 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002158 sodC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072895 sodC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0255991 sodC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001775 sodC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001637 sodC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002969 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002335 sodC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000122 sodC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000475 sodC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000897 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234921 sodC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005084 sodC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003444 sodC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008161 sodC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003981 sodC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126680 sodC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006430 sodC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005918 sodC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002224 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005904 sodC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004257 sodC CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030452 sodC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006659 sodC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000877 sodC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003574 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004863 sodC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007330 sodC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000798 sodC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000931 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004087 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1807729 to 1818250
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001542anmKCDScomplement18070881808197Downstream
AEC-0001543slyBCDSforward18084711808938Downstream
AEC-0001544slyACDScomplement18089851809419Downstream
AEC-0001545ydhJCDSforward18098591810716Downstream
AEC-0001546ydhKCDSforward18107161812728Downstream
AEC-0001547sodCCDScomplement18127291813250Matches
AEC-0001548ydhFCDScomplement18133311814227Upstream
AEC-0001549ydhLCDScomplement18142761814515Upstream
AEC-0001550ydhMCDSforward18147021815217Upstream
AEC-0001551nemACDSforward18152541816351Upstream
AEC-0001552gloACDSforward18164321816839Upstream
AEC-0001553rntCDSforward18169421817589Upstream
AEC-0001554lhrCDSforward18176821822298Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948