Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001557 (sodB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001557 showshow history
Names
sodB ECDH10B_1790
Product
superoxide dismutase, Fe
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1823973 1824554 582 194
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001189 (IPR001189 Manganese/iron superoxide dismutase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006801 superoxide metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001189
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001189
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004784 superoxide dismutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001189
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name sodB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005537
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1790 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product superoxide dismutase, Fe Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001189 Manganese/iron superoxide dismutase Protein Sequence Similarity - InterPro Domain: IPR001189
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0005537 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005537
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006801 superoxide metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001189
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004784 superoxide dismutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001189
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001189
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002221 sodB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002366 sodB CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004203 sodB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005688 sodB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001613 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010226 sodB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001575 sodB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007684 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005493 sodB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005981 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078165 sodB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008854 sodB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008771 sodB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001857 sodB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006306 sodB CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005747 sodB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010055 sodB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010444 sodB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010443 sodB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007208 sodB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008487 sodB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010899 sodB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010906 sodB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010611 sodB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010820 sodB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026445 sodB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008598 sodB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006410 sodB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0005537 sodB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001699 sodB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001809 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001541 sodB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132346 sodB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004219 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001854 sodB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005917 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001617 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001683 sodB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006181 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005294 sodB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005121 sodB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0009026 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005964 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004900 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004940 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004409 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005029 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005908 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004881 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001432 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001422 sodB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001902 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006151 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006833 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005614 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004946 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0108450 sodB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083013 sodB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094807 sodB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007936 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005606 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008325 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001630 sodB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007262 sodB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007571 sodB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002171 sodB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072906 sodB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087991 sodB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001787 sodB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001627 sodB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000546 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006317 sodB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000910 sodB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000740 sodB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002055 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239476 sodB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006685 sodB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002092 sodB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004873 sodB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001075 sodB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123189 sodB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006985 sodB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006731 sodB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001631 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007880 sodB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006122 sodB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031653 sodB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008069 sodB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002217 sodB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000903 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006985 sodB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005726 sodB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002383 sodB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002825 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002197 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1818973 to 1829554
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001554lhrCDSforward18176821822298Upstream
AEC-0001555grxDCDScomplement18223491822696Upstream
AEC-0001556ydhOCDSforward18230301823845Upstream
AEC-0001557sodBCDSforward18239731824554Matches
AEC-0001558ydhPCDScomplement18247161825885Downstream
AEC-0001559ydhBCDScomplement18274611828393Downstream
AEC-0001560ydhCCDSforward18285061829717Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948