Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001561 (cfa) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001561 showshow history
Names
cfa ECDH10B_1795
Product
cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1830008 1831156 1149 383
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003333 (IPR003333 Mycolic acid cyclopropane synthase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008610 lipid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003333
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008825 cyclopropane-fatty-acyl-phospholipid synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003333
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cfa Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005555
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1795 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003333 Mycolic acid cyclopropane synthase Protein Sequence Similarity - InterPro Domain: IPR003333
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0005555 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005555
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008610 lipid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003333
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008825 cyclopropane-fatty-acyl-phospholipid synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003333
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001296 cfa CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000278 cfa CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015820 CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001869 cfa CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004209 cfa CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009491 cfa CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001620 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010232 cfa CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001580 cfa CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007678 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005499 cfa CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005975 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078171 cfa CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010394 cfa CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008777 cfa CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001863 cfa CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006312 cfa CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002683 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005755 cfa CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010061 cfa CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010450 cfa CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010461 cfa CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007214 cfa CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010893 cfa CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0011032 cfa CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026450 cfa CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008592 cfa CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006416 cfa CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0005555 cfa CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001704 cfa CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001814 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001535 cfa CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132351 cfa CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004213 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001859 cfa CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062185 cfa CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001118 cfa CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002818 cfa CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001076 cfa CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005921 cfa CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001622 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001679 cfa CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006185 cfa CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005312 cfa CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005138 cfa CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008126 cfa CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005923 cfa CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004896 cfa CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004936 cfa CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004405 cfa CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005025 cfa CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005904 cfa CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004885 cfa CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001436 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001426 cfa CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001909 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006147 cfa CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006837 cfa CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005610 cfa CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004942 cfa CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0108461 cfa CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083009 cfa CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094791 cfa CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007940 cfa CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008321 cfa CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001625 cfa CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007268 cfa CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007577 cfa CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002176 cfa CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072911 cfa CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087996 cfa CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001792 cfa CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001622 cfa CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000550 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006338 cdfA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000906 cdfA_4 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000745 cfa pseudogene
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002059 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239492 cfa CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006689 cfa CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002097 cfa CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004877 cfa CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001071 cfa CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123216 cfa CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006981 cfa CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006735 cfa CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001635 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007876 cfa CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006126 cfa CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031649 cfa CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008065 cfa CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002222 cfa CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000898 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006981 cfa CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005722 cfa CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002387 cfa CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002830 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002191 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1825008 to 1836156
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001558ydhPCDScomplement18247161825885Upstream
AEC-0001559ydhBCDScomplement18274611828393Upstream
AEC-0001560ydhCCDSforward18285061829717Upstream
AEC-0001561cfaCDSforward18300081831156Matches
AEC-0001562ribCCDScomplement18311961831837Downstream
AEC-0001563mdtKCDSforward18320521833425Downstream
AEC-0001564ydhQCDScomplement18334661834722Downstream
AEC-0004135valVtRNAforward18350301835106Downstream
AEC-0004136valWtRNAforward18351111835187Downstream
AEC-0001565ydhRCDSforward18352951835600Downstream
AEC-0001566ydhSCDSforward18357261837330Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948