Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001579 (sufD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001579 showshow history
Names
sufD ECDH10B_1815
Product
component of SufBCD complex
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1849115 1850386 1272 424
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011542 (IPR011542 SUF system FeS cluster assembly, SufD) Jul 2009
Automated Process Approved IPR000825 (IPR000825 SUF system FeS cluster assembly, SufBD) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0016226 iron-sulfur cluster assembly GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011542
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005515 protein binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011542
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name sufD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005617
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1815 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product component of SufBCD complex Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR011542 SUF system FeS cluster assembly, SufD Protein Sequence Similarity - InterPro Domain: IPR011542
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000825 SUF system FeS cluster assembly, SufBD Protein Sequence Similarity - InterPro Domain: IPR000825
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0005617 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005617
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0016226 iron-sulfur cluster assembly GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011542
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005515 protein binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011542
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001652 sufD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001549 sufD CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020087 sufD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001880 sufD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004230 sufD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007726 sufD CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001640 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010252 sufD CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001598 sufD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007654 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009255 sufD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008181 SufD CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078194 sufD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007415 sufD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009071 sufD CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001883 sufD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006334 sufD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006190 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005778 sufD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010082 sufD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008642 sufD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010021 sufD CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007235 sufD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007663 sufD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010872 sufD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008619 sufD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009871 sufD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007834 sufD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007850 sufD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010076 sufD CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026470 sufD CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006437 sufD CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0005617 sufD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001724 sufD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001835 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001514 sufD CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132371 sufD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004191 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001880 sufD CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062121 sufD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001022 sufD CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003798 sufD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002420 sufD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005973 sufD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001677 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001621 sufD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006239 sufD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005464 sufD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005283 sufD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008180 sufD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005868 sufD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004842 sufD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004882 sufD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007856 sufD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004971 sufD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005852 sufD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004937 sufD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001969 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006095 sufD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006889 sufD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005557 sufD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008420 sufD CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0108562 sufD CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082954 sufD CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094647 sufD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007995 sufD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008404 sufD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008454 sufD CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001603 ynhC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007291 sufD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007693 sufD CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002206 ynhC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072934 sufD CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088016 sufD CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001814 ynhC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001602 sufD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000558 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006369 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000895 sufD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001479 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239521 sufD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006705 sufD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002113 sufD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004891 sufD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001061 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123263 sufD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008324 sufD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007758 sufD CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008874 sufD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006141 sufD CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031634 sufD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008051 sufD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002238 sufD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000884 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006968 sufD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005711 sufD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002398 sufD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002844 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002177 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1844115 to 1855386
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001574pykFCDSforward18442931845705Downstream
AEC-0001575lppCDSforward18460161846252Downstream
AEC-0001576ynhGCDScomplement18463161847320Downstream
AEC-0001577sufECDScomplement18474691847885Downstream
AEC-0001578sufSCDScomplement18478981849118Overlaps Downstream
AEC-0001579sufDCDScomplement18491151850386Matches
AEC-0001580sufCCDScomplement18503611851107Overlaps Upstream
AEC-0001581sufBCDScomplement18511171852604Upstream
AEC-0001582sufACDScomplement18526131852981Upstream
AEC-0004255rydBncRNAcomplement18533081853375Upstream
AEC-0001583ydiHCDScomplement18535291853717Upstream
AEC-0001584ydiICDScomplement18538171854227Upstream
AEC-0001585ydiJCDScomplement18542241857280Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948