Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001580 (sufC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001580 showshow history
Names
sufC ECDH10B_1816
Product
component of SufBCD complex, ATP-binding component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1850361 1851107 747 249
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Jul 2009
Automated Process Approved IPR010230 (IPR010230 FeS cluster assembly SUF system, ATPase SufC) Jul 2009
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010230
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name sufC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005619
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1816 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product component of SufBCD complex, ATP-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010230 FeS cluster assembly SUF system, ATPase SufC Protein Sequence Similarity - InterPro Domain: IPR010230
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0005619 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005619
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010230
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001545 sufC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001525 sufC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020088 sufC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001881 sufC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004231 sufC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007727 sufC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001641 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010253 sufC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001599 sufC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007653 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009254 sufC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008180 SufC CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078195 sufC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007414 sufC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009072 sufC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001884 sufC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006335 sufC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006191 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005779 sufC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010083 sufC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008643 sufC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010020 sufC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007236 sufC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007662 sufC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010871 sufC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008620 sufC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009872 sufC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007833 sufC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007849 sufC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010077 sufC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026471 sufC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006785 sufC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006438 sufC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0005619 sufC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001725 sufC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001836 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001513 sufC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132372 sufC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004190 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001881 sufC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062120 sufC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001021 sufC CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003799 sufC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002419 sufC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005974 sufC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001678 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001620 sufC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006240 sufC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005466 sufC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005285 sufC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008181 sufC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005867 sufC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004841 sufC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004881 sufC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007855 sufC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004970 sufC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005851 sufC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004938 sufC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001493 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001483 sufC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001970 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006094 sufC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006890 sufC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005556 sufC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008419 sufC CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0108564 sufC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082953 sufC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094644 sufC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007996 sufC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008403 sufC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008453 sufC CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001602 ynhD CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007292 sufC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007692 sufC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002207 ynhD CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072935 sufC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088017 sufC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001815 ynhD CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001601 sufC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000559 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006371 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000894 sufC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000225 sufC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001480 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239522 sufC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006706 sufC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002114 sufC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004892 sufC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001060 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123266 sufC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008323 sufC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007759 sufC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001541 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008875 sufC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006142 sufC CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031633 sufC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008050 sufC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002239 sufC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000883 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006967 sufC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005710 sufC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002399 sufC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002845 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002176 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1845361 to 1856107
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001574pykFCDSforward18442931845705Downstream
AEC-0001575lppCDSforward18460161846252Downstream
AEC-0001576ynhGCDScomplement18463161847320Downstream
AEC-0001577sufECDScomplement18474691847885Downstream
AEC-0001578sufSCDScomplement18478981849118Downstream
AEC-0001579sufDCDScomplement18491151850386Overlaps Downstream
AEC-0001580sufCCDScomplement18503611851107Matches
AEC-0001581sufBCDScomplement18511171852604Upstream
AEC-0001582sufACDScomplement18526131852981Upstream
AEC-0004255rydBncRNAcomplement18533081853375Upstream
AEC-0001583ydiHCDScomplement18535291853717Upstream
AEC-0001584ydiICDScomplement18538171854227Upstream
AEC-0001585ydiJCDScomplement18542241857280Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948