Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001581 (sufB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001581 showshow history
Names
sufB ECDH10B_1817
Product
component of SufBCD complex
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1851117 1852604 1488 496
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR010231 (IPR010231 SUF system FeS cluster assembly, SufB) Jul 2009
Automated Process Approved IPR000825 (IPR000825 SUF system FeS cluster assembly, SufBD) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0016226 iron-sulfur cluster assembly GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010231
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005515 protein binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010231
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name sufB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005621
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1817 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product component of SufBCD complex Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR010231 SUF system FeS cluster assembly, SufB Protein Sequence Similarity - InterPro Domain: IPR010231
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000825 SUF system FeS cluster assembly, SufBD Protein Sequence Similarity - InterPro Domain: IPR000825
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0005621 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005621
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0016226 iron-sulfur cluster assembly GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010231
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005515 protein binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010231
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001607 sufB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001527 sufB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020089 sufB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001882 sufB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004232 sufB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007728 sufB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001642 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010254 sufB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001600 sufB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007652 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009253 sufB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008179 SufB CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078196 sufB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007413 sufB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009073 sufB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001885 sufB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006336 sufB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006192 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005780 sufB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010084 sufB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008644 sufB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010019 sufB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007237 sufB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007661 sufB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010870 sufB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008621 sufB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009873 sufB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007832 sufB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007848 sufB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010078 sufB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026472 sufB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006784 sufB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006439 sufB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0005621 sufB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001726 sufB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001837 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001512 sufB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132373 sufB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004189 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001882 sufB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062119 sufB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001020 sufB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003800 sufB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002418 sufB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005975 sufB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001679 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001619 sufB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006241 sufB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005470 sufB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005289 sufB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008182 sufB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005866 sufB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004840 sufB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004880 sufB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007854 sufB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004969 sufB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005850 sufB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004939 sufB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001494 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001484 sufB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001971 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006093 sufB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006891 sufB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005555 sufB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008418 sufB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0108568 sufB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082952 sufB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094641 sufB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007997 sufB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008402 sufB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008452 sufB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001601 ynhE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007691 sufB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072936 sufB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088018 sufB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001816 ynhE CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001600 sufB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000560 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006375 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000893 sufB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000224 sufB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001481 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239523 sufB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006707 sufB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002115 sufB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004893 sufB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001059 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123270 sufB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008322 sufB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007760 sufB CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008876 sufB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006143 sufB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031632 sufB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008049 sufB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002240 sufB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000882 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006965 sufB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005709 sufB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002400 sufB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002846 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002175 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1846117 to 1857604
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001575lppCDSforward18460161846252Downstream
AEC-0001576ynhGCDScomplement18463161847320Downstream
AEC-0001577sufECDScomplement18474691847885Downstream
AEC-0001578sufSCDScomplement18478981849118Downstream
AEC-0001579sufDCDScomplement18491151850386Downstream
AEC-0001580sufCCDScomplement18503611851107Downstream
AEC-0001581sufBCDScomplement18511171852604Matches
AEC-0001582sufACDScomplement18526131852981Upstream
AEC-0004255rydBncRNAcomplement18533081853375Upstream
AEC-0001583ydiHCDScomplement18535291853717Upstream
AEC-0001584ydiICDScomplement18538171854227Upstream
AEC-0001585ydiJCDScomplement18542241857280Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948