Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001582 (sufA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001582 showshow history
Names
sufA ECDH10B_1818
Product
Fe-S cluster assembly protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1852613 1852981 369 123
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011298 (IPR011298 FeS assembly scaffold SufA) Jul 2009
Automated Process Approved IPR016092 (IPR016092 FeS cluster insertion protein) Jul 2009
Automated Process Approved IPR000361 (IPR000361 FeS cluster biogenesis) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0016226 iron-sulfur cluster assembly GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016092
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016092
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0005198 structural molecule activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016092
Reference: Escherichia coli K-12 DH10B
Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name sufA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005624
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_1818 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product Fe-S cluster assembly protein Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2007
Protein Family
Automated Process Approved protein family IPR011298 FeS assembly scaffold SufA Protein Sequence Similarity - InterPro Domain: IPR011298
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR000361 FeS cluster biogenesis Protein Sequence Similarity - InterPro Domain: IPR000361
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR016092 FeS cluster insertion protein Protein Sequence Similarity - InterPro Domain: IPR016092
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0005624 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005624
Reference: Escherichia coli K-12 MG1655
Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0016226 iron-sulfur cluster assembly GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016092
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0005198 structural molecule activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016092
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016092
Reference: Escherichia coli K-12 DH10B
Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001375 sufA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001526 sufA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020090 sufA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001883 sufA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004233 sufA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007729 sufA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001643 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010255 sufA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001601 sufA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007651 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009252 sufA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008178 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078197 sufA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007412 sufA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009074 sufA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001886 sufA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006337 sufA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006193 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005781 sufA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010085 sufA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008645 sufA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010018 sufA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007238 sufA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007660 sufA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010869 sufA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008622 sufA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009874 sufA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007831 sufA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007847 sufA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010079 sufA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026473 sufA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006783 iscA_2 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006440 sufA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0005624 sufA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001727 sufA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001838 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001511 sufA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132374 sufA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004188 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001883 sufA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062118 sufA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001019 sufA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001677 sufA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002417 sufA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005976 sufA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001680 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001618 sufA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006242 sufA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005472 sufA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005291 sufA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008183 sufA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005865 sufA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004839 sufA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004879 sufA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007853 sufA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004968 sufA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005849 sufA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004940 sufA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001495 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001485 sufA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001972 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006092 sufA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006892 sufA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005554 sufA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008417 sufA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0108571 sufA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082951 sufA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094638 sufA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007998 sufA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008401 sufA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008451 sufA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001600 ydiC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007294 sufA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007690 sufA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072937 ydiC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088019 ydiC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001817 ydiC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001599 sufA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000561 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006377 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000892 sufA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000223 sufA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001482 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239524 sufA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006708 sufA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002116 sufA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004894 sufA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001058 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123272 sufA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008321 sufA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007761 sufA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000951 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008877 sufA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006144 sufA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031631 sufA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008048 sufA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002241 sufA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000881 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006964 sufA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005708 sufA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002401 sufA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002847 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002174 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1847613 to 1857981
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001577sufECDScomplement18474691847885Downstream
AEC-0001578sufSCDScomplement18478981849118Downstream
AEC-0001579sufDCDScomplement18491151850386Downstream
AEC-0001580sufCCDScomplement18503611851107Downstream
AEC-0001581sufBCDScomplement18511171852604Downstream
AEC-0001582sufACDScomplement18526131852981Matches
AEC-0004255rydBncRNAcomplement18533081853375Upstream
AEC-0001583ydiHCDScomplement18535291853717Upstream
AEC-0001584ydiICDScomplement18538171854227Upstream
AEC-0001585ydiJCDScomplement18542241857280Upstream
AEC-0001586ydiKCDSforward18576691858781Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948