Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001598 (ydiD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001598 showshow history
Names
ydiD ECDH10B_1837
Product
short chain acyl-CoA synthetase, anaerobic
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1871572 1873272 1701 567
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000873 (IPR000873 AMP-dependent synthetase/ligase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 DH10B
Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ydiD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005676
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_1837 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product short chain acyl-CoA synthetase, anaerobic Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2007
Protein Family
Automated Process Approved protein family IPR000873 AMP-dependent synthetase/ligase Protein Sequence Similarity - InterPro Domain: IPR000873
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0005676 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005676
Reference: Escherichia coli K-12 MG1655
Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 DH10B
Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003445 fadK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003719 fadK CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004258 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007749 fadK CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001660 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010277 fadK CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001617 ydiD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007631 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009233 fadK CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008158 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078215 fadK CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007392 fadK CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009095 fadK CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001905 fadK CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006355 fadK CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006211 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007811 fadK CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010099 fadK CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026490 fadK CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006763 fadK CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0005676 fadK CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001746 ydiD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001856 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001493 fadK CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132391 fadK CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004171 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001901 ydiD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005996 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001596 ydiD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006263 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005534 ydiD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005352 ydiD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008203 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005844 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004819 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004859 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007832 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004947 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005829 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004961 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001996 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006071 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006912 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005534 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008674 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094586 fadK CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008018 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008379 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008429 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007315 fadK CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072729 ydiD CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087845 ydiD CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001619 ydiD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003800 irp5_2 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1866572 to 1878272
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001592ydiOCDSforward18657911866942Upstream
AEC-0001593ydiPCDScomplement18669851867896Upstream
AEC-0001594ydiQCDSforward18682121868976Upstream
AEC-0001595ydiRCDSforward18689961869934Upstream
AEC-0001596ydiSCDSforward18699901871279Upstream
AEC-0001597ydiTCDSforward18712761871569Upstream
AEC-0001598ydiDCDSforward18715721873272Matches
AEC-0001599ppsCDScomplement18733291875707Downstream
AEC-0001600ydiACDSforward18760401876873Downstream
AEC-0001601aroHCDSforward18770301878076Downstream
AEC-0001602ydiECDSforward18782081878399Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948