Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001601 (aroH) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001601 showshow history
Names
aroH ECDH10B_1840
Product
3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tryptophan repressible
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1877030 1878076 1047 349
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006219 (IPR006219 DHAP synthase, class 1) Jul 2009
Automated Process Approved IPR006218 (IPR006218 DAHP synthetase I/KDSA) Jul 2009
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009073 aromatic amino acid family biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006219
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006218
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006219
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name aroH Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005686
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1840 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tryptophan repressible Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006219 DHAP synthase, class 1 Protein Sequence Similarity - InterPro Domain: IPR006219
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006218 DAHP synthetase I/KDSA Protein Sequence Similarity - InterPro Domain: IPR006218
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0005686 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005686
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006218
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009073 aromatic amino acid family biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006219
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006219
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001234 aroH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001289 aroH CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019890 aroH CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001890 aroH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004261 aroH CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007753 aroH CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001664 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010280 aroH CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001620 aroH CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007628 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009229 aroH CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008154 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078218 aroH CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007388 aroH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009099 aroH CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001908 aroH CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006359 aroH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006216 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005805 aroH CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010109 aroH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008669 aroH CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007262 aroH CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007636 aroH CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010845 aroH CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008646 aroH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009899 aroH CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007807 aroH CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007823 aroH CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010103 aroH CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026493 aroH CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006759 aroH_1 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006460 aroH CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0005686 aroH CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001749 aroH CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001860 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001485 aroH CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132394 aroH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004168 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001904 aroH CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062109 aroH CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001172 aroH CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000475 aroH CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002408 aroH CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006000 aroH CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001692 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001592 aroH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006267 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005546 aroH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005364 aroH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008207 aroH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005840 aroH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004815 aroH CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004855 aroH CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007828 aroH CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004943 aroH CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005825 aroH CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004965 aroH CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001506 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001496 aroH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002001 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006067 aroH CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006916 aroH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005530 aroH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008678 aroH CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0108593 aroH CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082942 aroH CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094573 aroH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008022 aroH CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008375 aroH CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008425 aroH CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001576 aroH CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007319 aroH CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007670 aroH CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002079 aroH CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072726 aroH CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087842 aroH CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001616 aroH CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001579 aroH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000568 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006402 aroH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000886 aroH CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000217 aroH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001488 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239541 aroH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006717 aroH CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002122 aroH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004900 aroH CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001051 aroH CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123302 aroH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008315 aroH CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007768 aroH CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002295 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008883 aroH CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006151 aroH CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031625 aroH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008040 aroH CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002247 aroH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000875 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006958 aroH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005701 aroH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002407 aroH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002854 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002168 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1872030 to 1883076
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001598ydiDCDSforward18715721873272Upstream
AEC-0001599ppsCDScomplement18733291875707Upstream
AEC-0001600ydiACDSforward18760401876873Upstream
AEC-0001601aroHCDSforward18770301878076Matches
AEC-0001602ydiECDSforward18782081878399Downstream
AEC-0001603ydiUCDScomplement18784031879839Downstream
AEC-0001604ydiVCDScomplement18799021880615Downstream
AEC-0001605nlpCCDScomplement18808621881326Downstream
AEC-0001606btuDCDScomplement18814041882153Downstream
AEC-0001607btuECDScomplement18821531882704Downstream
AEC-0001608btuCCDScomplement18827671883747Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948