Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001610 (pheT) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001610 showshow history
Names
pheT ECDH10B_1849
Product
phenylalanine tRNA synthetase, beta subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1884152 1886539 2388 796
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002547 (IPR002547 tRNA-binding domain) Jul 2009
Automated Process Approved IPR004532 (IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit) Jul 2009
Automated Process Approved IPR005146 (IPR005146 B3/B4 tRNA-binding domain) Jul 2009
Automated Process Approved IPR005147 (IPR005147 tRNA synthetase, B5-domain) Jul 2009
Automated Process Approved IPR005121 (IPR005121 Ferrodoxin-fold anticodon-binding domain) Jul 2009
Automated Process Approved IPR016027 (IPR016027 (DEPRECATED) Nucleic acid-binding, OB-fold-like) Jul 2009
Automated Process Approved IPR009061 (IPR009061 Putative DNA-binding domain superfamily) Jul 2009
Automated Process Approved IPR012340 (IPR012340 Nucleic acid-binding, OB-fold) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008033 tRNA processing GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005121
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006432 phenylalanyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004532
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004532
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004532
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003723 RNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005146
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005147
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004532
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000049 tRNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002547
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004532
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004826 phenylalanine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004532
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name pheT Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005717
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1849 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product phenylalanine tRNA synthetase, beta subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR005146 B3/B4 tRNA-binding domain Protein Sequence Similarity - InterPro Domain: IPR005146
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit Protein Sequence Similarity - InterPro Domain: IPR004532
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002547 tRNA-binding domain Protein Sequence Similarity - InterPro Domain: IPR002547
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005147 tRNA synthetase, B5-domain Protein Sequence Similarity - InterPro Domain: IPR005147
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005121 Ferrodoxin-fold anticodon-binding domain Protein Sequence Similarity - InterPro Domain: IPR005121
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012340 Nucleic acid-binding, OB-fold Protein Sequence Similarity - InterPro Domain: IPR012340
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR009061 Putative DNA-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR009061
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016027 (DEPRECATED) Nucleic acid-binding, OB-fold-like Protein Sequence Similarity - InterPro Domain: IPR016027
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0005717 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005717
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006432 phenylalanyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004532
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004532
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008033 tRNA processing GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005121
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004532
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004532
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000049 tRNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002547
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004532
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005147
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003723 RNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005146
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004826 phenylalanine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004532
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000219 pheT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000155 pheT CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020108 pheT CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001900 pheT CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004269 pheT CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007762 pheT CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001673 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010289 pheT CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001627 pheT CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007618 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008119 pheT CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008145 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007358 pheT CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009157 pheT CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001962 pheT CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006369 pheT CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006225 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005814 pheT CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010118 pheT CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008678 pheT CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007583 pheT CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007271 pheT CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007627 pheT CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010836 pheT CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008655 pheT CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009908 pheT CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007798 pheT CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007814 pheT CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008423 pheT CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026502 pheT CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006750 pheT CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006469 pheT CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0005717 pheT CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001758 pheT CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001913 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001476 pheT CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132403 pheT CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004159 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001913 pheT CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062682 pheT CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001353 pheT CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001811 pheT CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003284 pheT CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006009 pheT CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001701 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001583 pheT CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006276 pheT CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005572 pheT CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005389 pheT CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008216 pheT CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005830 pheT CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004806 pheT CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004846 pheT CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007819 pheT CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004933 pheT CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005816 pheT CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004974 pheT CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001515 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001505 pheT CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002011 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006058 pheT CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006925 pheT CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005521 pheT CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008687 pheT CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0108614 pheT CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082933 pheT CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094549 pheT CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008031 pheT CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008366 pheT CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008415 pheT CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001528 pheT CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007366 pheT CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008135 pheT CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002089 pheT CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072717 pheT CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087834 pheT CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001605 pheT CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001568 pheT CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000701 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005638 pheT CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000866 pheT CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000198 pheT CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001686 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239587 pheT CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006735 pheT CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002142 pheT CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004918 pheT CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001036 pheT CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123364 pheT CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008296 pheT CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007785 pheT CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008901 pheT CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006169 pheT CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031606 pheT CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008022 pheT CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002267 pheT CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000856 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006940 pheT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005684 pheT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002423 pheT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002874 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002148 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1879152 to 1891539
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001603ydiUCDScomplement18784031879839Downstream
AEC-0001604ydiVCDScomplement18799021880615Downstream
AEC-0001605nlpCCDScomplement18808621881326Downstream
AEC-0001606btuDCDScomplement18814041882153Downstream
AEC-0001607btuECDScomplement18821531882704Downstream
AEC-0001608btuCCDScomplement18827671883747Downstream
AEC-0001609ihfACDScomplement18838481884147Downstream
AEC-0001610pheTCDScomplement18841521886539Matches
AEC-0001611pheSCDScomplement18865541887537Upstream
AEC-0001612pheMCDScomplement18878211887865Upstream
AEC-0001613rplTCDScomplement18879881888344Upstream
AEC-0001614rpmICDScomplement18883971888594Upstream
AEC-0001615thrSCDScomplement18892371891165Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948