Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001628 (katE) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001628 showshow history
Names
katE ECDH10B_1870
Product
hydroperoxidase HPII(III) (catalase)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1902462 1904723 2262 754
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002226 (IPR002226 Catalase haem-binding site) Jul 2009
Automated Process Approved IPR010582 (IPR010582 Catalase immune-responsive domain) Jul 2009
Automated Process Approved IPR011614 (IPR011614 Catalase core domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006979 response to oxidative stress GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002226
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0020037 heme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010582
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004096 catalase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002226
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005506 iron ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010582
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name katE Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005780
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1870 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product hydroperoxidase HPII(III) (catalase) Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR002226 Catalase haem-binding site Protein Sequence Similarity - InterPro Domain: IPR002226
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011614 Catalase core domain Protein Sequence Similarity - InterPro Domain: IPR011614
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010582 Catalase immune-responsive domain Protein Sequence Similarity - InterPro Domain: IPR010582
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0005780 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005780
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006979 response to oxidative stress GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002226
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0020037 heme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010582
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004096 catalase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002226
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005506 iron ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010582
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001285 katE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000542 katE CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007782 katE CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001690 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010309 katE CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001642 katE CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007599 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008142 katE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009522 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078250 katE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007336 katE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009693 katE CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001980 katE CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006390 katE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006244 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005834 katE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010137 katE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008697 katE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007564 katE CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007290 katE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007608 katE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010817 katE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008674 katE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009927 katE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007779 katE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007795 katE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008442 katE CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026520 katE CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006732 katE CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006488 katE CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0005780 katE CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001779 katE CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001933 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001458 katE CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132421 katE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004139 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001932 katE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006027 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001563 katE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006295 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005631 katE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005447 katE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008234 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005811 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008037 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004827 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007577 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004915 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005799 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004992 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001535 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001526 katE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002034 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006039 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007503 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005503 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008167 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0108657 katE CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082912 katE CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094488 katE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008117 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008156 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006153 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006148 katE CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072691 katE CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087813 katE CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001583 katE CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001548 katE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003589 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004143 katA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000597 katA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003552 katA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003828 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236383 katA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005429 katA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001120 katA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005303 katA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002166 katA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119262 katA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006059 katA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004732 katA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002051 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007715 katA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005283 katA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032727 katA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005434 katA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003332 katA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002987 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006483 katA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006766 katA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001314 katA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001578 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003392 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1897462 to 1909723
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001622yniBCDScomplement18972921897828Upstream
AEC-0001623yniCCDSforward18979751898643Upstream
AEC-0001624ydjMCDSforward18988061899396Upstream
AEC-0001625ydjNCDSforward18995291900920Upstream
AEC-0001626ydjOCDScomplement19009241901727Upstream
AEC-0001627cedACDScomplement19020161902258Upstream
AEC-0001628katECDSforward19024621904723Matches
AEC-0001629chbGCDScomplement19049811905730Downstream
AEC-0001630chbFCDScomplement19057431907095Downstream
AEC-0001631chbRCDScomplement19072001908042Downstream
AEC-0001632chbACDScomplement19080501908400Downstream
AEC-0001633chbCCDScomplement19084511909809Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948