Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001634 (chbB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001634 showshow history
Names
chbB ECDH10B_1876
Product
N,N'-diacetylchitobiose-specific enzyme IIB component of PTS
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1909894 1910214 321 107
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013012 (IPR013012 Phosphotransferase system, EIIB component, type 3) Jul 2009
Automated Process Approved IPR014350 (IPR014350 (DEPRECATED) Phosphotransferase system, EIIB component, type 3, subgroup) Jul 2009
Automated Process Approved IPR003501 (IPR003501 Phosphotransferase system, EIIB component, type 2/3) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003501
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003501
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005529 (DEPRECATED) sugar binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014350
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name chbB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005797
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1876 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product N,N'-diacetylchitobiose-specific enzyme IIB component of PTS Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR013012 Phosphotransferase system, EIIB component, type 3 Protein Sequence Similarity - InterPro Domain: IPR013012
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003501 Phosphotransferase system, EIIB component, type 2/3 Protein Sequence Similarity - InterPro Domain: IPR003501
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR014350 (DEPRECATED) Phosphotransferase system, EIIB component, type 3, subgroup Protein Sequence Similarity - InterPro Domain: IPR014350
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0005797 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005797
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003501
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005529 (DEPRECATED) sugar binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014350
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003501
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002267 chbB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002471 chbB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018472 celA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000519 bglE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004299 chbB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007788 chbB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001696 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010315 chbB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001648 celA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007592 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008148 chbB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009516 pseudogene
Automated Process Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078256 chbB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007330 chbB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009699 chbB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001986 chbB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006396 chbB CDS
Person Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006250 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005840 chbB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010143 chbB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008703 chbB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007558 chbB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007296 chbB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007602 chbB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010811 chbB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008680 chbB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009933 chbB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007773 chbB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007789 chbB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008448 chbB CDS
Automated Process Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026526 chbB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006726 chbB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006495 chbB CDS
Person Approved Go view Escherichia coli K-12 MG1655 ABE-0005797 chbB CDS
Automated Process Approved Go view Escherichia coli K-12 W3110 ADY-0001785 chbB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001939 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001452 chbB CDS
Automated Process Approved Go view Escherichia coli Sakai (EHEC) ACA-0132427 chbB CDS
Person Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004133 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001938 celA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001234 celA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006033 chbB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001736 CDS
Automated Process Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001557 celA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006301 chbB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005651 celA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005467 celA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008240 chbB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005805 chbB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008031 chbB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004821 chbB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004909 chbB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005793 chbB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004998 chbB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001541 CDS
Automated Process Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001532 celA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002040 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006033 chbB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007509 chbB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005497 chbB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008161 chbB CDS
Automated Process Approved Go view Salmonella Typhi CT18 ABX-0108674 celA CDS
Automated Process Approved Go view Salmonella Typhi Ty2 ABS-0082905 celA CDS
Automated Process Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094471 celA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008123 chbB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008150 chbB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006159 chbB CDS
Automated Process Approved Go view Shigella boydii 227 ADV-0001495 celA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007393 chbB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006139 chbB CDS
Automated Process Approved Go view Shigella flexneri 2457T ABQ-0072682 celA CDS
Automated Process Approved Go view Shigella flexneri 301 ABT-0087806 celA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001577 celA CDS
Automated Process Approved Go view Shigella sonnei 046 ADD-0001542 chbB CDS
Automated Process Approved Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002045 CDS
Automated Process Approved Go view Yersinia enterocolitica 8081 BAH-0002909 celA CDS
Automated Process Approved Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003035 chbB CDS
Automated Process Approved Go view Yersinia intermedia ATCC 29909 [T] AEH-0001769 celA CDS
Automated Process Approved Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002098 CDS
Automated Process Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240301 celA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007690 chbB CDS
Automated Process Approved Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002895 celA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006475 chbB CDS
Automated Process Approved Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000804 celA CDS
Automated Process Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124255 celA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004462 chbB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005372 chbB CDS
Automated Process Approved Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002032 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009375 chbB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004747 chbB CDS
Automated Process Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030921 celA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007250 chbB CDS
Automated Process Approved Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001410 celA CDS
Automated Process Approved Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001904 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005298 chbB CDS
Automated Process Approved Go view Yersinia pseudotuberculosis IP31758 ADS-0005047 chbB CDS
Automated Process Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003027 celA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003638 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001341 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1904894 to 1915214
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001629chbGCDScomplement19049811905730Downstream
AEC-0001630chbFCDScomplement19057431907095Downstream
AEC-0001631chbRCDScomplement19072001908042Downstream
AEC-0001632chbACDScomplement19080501908400Downstream
AEC-0001633chbCCDScomplement19084511909809Downstream
AEC-0001634chbBCDScomplement19098941910214Matches
AEC-0001635osmECDScomplement19105131910851Upstream
AEC-0001636nadECDSforward19110531911880Upstream
AEC-0001637choCDSforward19121101912997Upstream
AEC-0001638ydjRCDScomplement19129571913532Upstream
AEC-0001639spyCDScomplement19137351914220Upstream
AEC-0001640astECDScomplement19145501915518Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948