Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001640 (astE) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001640 showshow history
Names
astE ECDH10B_1882
Product
succinylglutamate desuccinylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1914550 1915518 969 323
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR016681 (IPR016681 Succinylglutamate desuccinylase) Jul 2009
Automated Process Approved IPR007036 (IPR007036 Succinylglutamate desuccinylase/aspartoacylase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007036
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016788 hydrolase activity, acting on ester bonds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007036
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name astE Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005815
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1882 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product succinylglutamate desuccinylase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR016681 Succinylglutamate desuccinylase Protein Sequence Similarity - InterPro Domain: IPR016681
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR007036 Succinylglutamate desuccinylase/aspartoacylase Protein Sequence Similarity - InterPro Domain: IPR007036
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0005815 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005815
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007036
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016788 hydrolase activity, acting on ester bonds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007036
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002022 astE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002161 astE CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001919 astE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007794 astE CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001702 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010321 astE CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001654 ydjS CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007584 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008154 astE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010210 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078263 astE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007324 astE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009705 astE CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001992 astE CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006403 astE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006257 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005846 astE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010149 astE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008709 astE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007552 astE CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007302 astE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007596 astE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010805 astE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008686 astE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009939 astE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007765 astE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007783 astE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008454 astE CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026532 astE CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006720 astE CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006502 astE CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0005815 astE CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001791 astE CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001945 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001446 astE CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132433 astE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004124 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001946 ydjS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006040 astE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001742 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001552 astE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006308 astE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005666 astE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005482 astE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008247 astE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005798 astE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008024 astE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004814 astE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007564 astE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004902 astE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005786 astE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005005 astE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001546 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001537 astE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002048 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006027 astE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007515 astE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005490 astE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008154 astE CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0108681 astE CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082900 astE CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094455 astE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008129 astE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008144 astE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006165 astE CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001489 ydjS CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007401 astE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006133 astE CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001768 ydjS CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072675 ydjS CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0255980 ydjS CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001571 ydjS CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001534 astE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000368 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007075 astE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000785 astE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000291 astE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000111 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238404 astE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006629 astE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001635 astE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004450 astE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001463 astE CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121840 astE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005386 astE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000602 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009132 astE CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032064 astE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006025 astE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001379 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007216 astE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006090 astE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002043 astE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002388 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002637 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1909550 to 1920518
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001633chbCCDScomplement19084511909809Downstream
AEC-0001634chbBCDScomplement19098941910214Downstream
AEC-0001635osmECDScomplement19105131910851Downstream
AEC-0001636nadECDSforward19110531911880Downstream
AEC-0001637choCDSforward19121101912997Downstream
AEC-0001638ydjRCDScomplement19129571913532Downstream
AEC-0001639spyCDScomplement19137351914220Downstream
AEC-0001640astECDScomplement19145501915518Matches
AEC-0001641astBCDScomplement19155111916854Overlaps Upstream
AEC-0001642astDCDScomplement19168511918329Upstream
AEC-0001643astACDScomplement19183261919360Upstream
AEC-0001644astCCDScomplement19193571920577Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948