Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001641 (astB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001641 showshow history
Names
astB ECDH10B_1883
Product
succinylarginine dihydrolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1915511 1916854 1344 448
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR007079 (IPR007079 Succinylarginine dihydrolase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006525 arginine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007079
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009015 N-succinylarginine dihydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007079
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name astB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005817
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1883 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product succinylarginine dihydrolase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR007079 Succinylarginine dihydrolase Protein Sequence Similarity - InterPro Domain: IPR007079
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0005817 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005817
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006525 arginine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007079
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009015 N-succinylarginine dihydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007079
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002114 astB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002124 astB CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001920 astB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004308 astB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007795 astB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001703 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010322 astB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001655 astB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007583 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008155 astB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010211 pseudogene
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078264 astB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007323 astB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009706 astB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001993 astB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006404 astB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006258 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005847 astB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010150 astB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008710 astB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007551 astB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007303 astB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007595 astB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010804 astB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008687 astB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009940 astB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007764 astB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007782 astB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008455 astB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026533 astB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006719 astB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006503 astB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0005817 astB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001792 astB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001946 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001445 astB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132434 astB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004123 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001947 astB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006041 astB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001743 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006309 astB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005668 astB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005484 astB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008248 astB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005797 astB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008023 astB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004813 astB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007563 astB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004901 astB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005785 astB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005006 astB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001547 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001538 astB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002049 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006026 astB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007516 astB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005489 astB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008153 astB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0108682 astB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082899 astB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094452 astB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008130 astB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008143 astB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006166 astB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001488 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007403 astB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001767 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001533 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000369 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007076 astB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000784 astB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000292 astB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000110 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238403 astB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006630 astB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001634 astB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004449 astB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001464 astB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121839 astB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005385 astB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000603 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009133 astB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032065 astB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006026 astB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001380 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007217 astB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006091 astB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002042 astB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002387 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002638 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1910511 to 1921854
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001635osmECDScomplement19105131910851Downstream
AEC-0001636nadECDSforward19110531911880Downstream
AEC-0001637choCDSforward19121101912997Downstream
AEC-0001638ydjRCDScomplement19129571913532Downstream
AEC-0001639spyCDScomplement19137351914220Downstream
AEC-0001640astECDScomplement19145501915518Overlaps Downstream
AEC-0001641astBCDScomplement19155111916854Matches
AEC-0001642astDCDScomplement19168511918329Overlaps Upstream
AEC-0001643astACDScomplement19183261919360Upstream
AEC-0001644astCCDScomplement19193571920577Upstream
AEC-0001645xthACDSforward19210231921829Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948