Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001643 (astA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001643 showshow history
Names
astA ECDH10B_1885
Product
arginine succinyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1918326 1919360 1035 345
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR007041 (IPR007041 Arginine N-succinyltransferase AstA/AruG) Jul 2009
Automated Process Approved IPR017650 (IPR017650 Arginine N-succinyltransferase) Jul 2009
Automated Process Approved IPR016181 (IPR016181 Acyl-CoA N-acyltransferase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006527 arginine catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007041
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008791 arginine N-succinyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007041
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name astA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005822
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1885 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product arginine succinyltransferase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR017650 Arginine N-succinyltransferase Protein Sequence Similarity - InterPro Domain: IPR017650
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016181 Acyl-CoA N-acyltransferase Protein Sequence Similarity - InterPro Domain: IPR016181
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR007041 Arginine N-succinyltransferase AstA/AruG Protein Sequence Similarity - InterPro Domain: IPR007041
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0005822 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005822
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006527 arginine catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007041
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008791 arginine N-succinyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007041
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002113 astA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002088 astA CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001922 astA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004310 astA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007797 astA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001705 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010324 astA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001657 astA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007581 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008157 astA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009559 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078266 astA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007321 astA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009708 astA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001995 astA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006406 astA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006260 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005849 astA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010152 astA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008712 astA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007549 astA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007305 astA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007593 astA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010802 astA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008689 astA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009942 astA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007762 astA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007780 astA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008457 astA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026535 astA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006717 astA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006505 astA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0005822 astA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001794 astA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001948 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001443 astA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132436 astA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004121 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001949 astA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006043 astA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001745 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006311 astA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005674 astA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008250 astA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005795 astA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008021 astA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004811 astA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007561 astA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004899 astA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005783 astA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005008 astA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001549 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001540 astA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002051 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006024 astA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007518 astA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005487 astA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008151 astA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0108687 astA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094446 astA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008132 astA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008141 astA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006168 astA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001486 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007405 astA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006129 astA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001765 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072672 CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0255979 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001568 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001531 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000371 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007081 astA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000782 astA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000294 astA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000108 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238400 astA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006632 astA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001632 astA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004447 astA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001466 astA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121834 astA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005383 astA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000605 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009135 astA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032067 astA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006028 astA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001382 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007219 astA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006093 astA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002040 astA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002385 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002640 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1913326 to 1924360
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001638ydjRCDScomplement19129571913532Downstream
AEC-0001639spyCDScomplement19137351914220Downstream
AEC-0001640astECDScomplement19145501915518Downstream
AEC-0001641astBCDScomplement19155111916854Downstream
AEC-0001642astDCDScomplement19168511918329Overlaps Downstream
AEC-0001643astACDScomplement19183261919360Matches
AEC-0001644astCCDScomplement19193571920577Overlaps Upstream
AEC-0001645xthACDSforward19210231921829Upstream
AEC-0001646ydjXCDSforward19219961922706Upstream
AEC-0001647ydjYCDSforward19227111923388Upstream
AEC-0001648ydjZCDSforward19234031924110Upstream
AEC-0001649ynjACDSforward19241101924658Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948