Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001644 (astC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001644 showshow history
Names
astC ECDH10B_1886
Product
succinylornithine transaminase, PLP-dependent
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1919357 1920577 1221 407
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR017652 (IPR017652 Acetyl/Succinylornithine transaminase family, bacteria) Jul 2009
Automated Process Approved IPR004636 (IPR004636 Acetylornithine/Succinylornithine transaminase family) Jul 2009
Automated Process Approved IPR005814 (IPR005814 Aminotransferase class-III) Jul 2009
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Jul 2009
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017652
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006525 arginine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004636
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017652
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017652
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name astC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005824
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1886 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product succinylornithine transaminase, PLP-dependent Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR017652 Acetyl/Succinylornithine transaminase family, bacteria Protein Sequence Similarity - InterPro Domain: IPR017652
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004636 Acetylornithine/Succinylornithine transaminase family Protein Sequence Similarity - InterPro Domain: IPR004636
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005814 Aminotransferase class-III Protein Sequence Similarity - InterPro Domain: IPR005814
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0005824 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005824
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017652
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006525 arginine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004636
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017652
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017652
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002202 astC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002280 astC CDS
Ortholog
Automated Process Approved Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001923 argM CDS
Automated Process Approved Go view Escherichia coli 101-1 (EAEC) BAB-0007798 astC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001706 CDS
Automated Process Approved Go view Escherichia coli 53638 (EIEC) ADP-0010325 argM CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001658 cstC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007580 CDS
Automated Process Approved Go view Escherichia coli B171 (EPEC) ADN-0008158 astC CDS
Automated Process Approved Go view Escherichia coli B7A (ETEC) ADK-0009558 CDS
Automated Process Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078267 astC CDS
Automated Process Approved Go view Escherichia coli E110019 (EPEC) ADM-0007320 astC CDS
Automated Process Approved Go view Escherichia coli E22 (EPEC) ADL-0009709 astC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001996 astC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006407 astC CDS
Automated Process Approved Go view Escherichia coli EC4024 (EHEC) BBI-0006261 CDS
Automated Process Approved Go view Escherichia coli EC4042 (EHEC) BBA-0005850 astC CDS
Automated Process Approved Go view Escherichia coli EC4045 (EHEC) BBB-0010153 astC CDS
Automated Process Approved Go view Escherichia coli EC4076 (EHEC) BAZ-0008713 astC CDS
Automated Process Approved Go view Escherichia coli EC4113 (EHEC) BAY-0007548 astC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007306 astC CDS
Automated Process Approved Go view Escherichia coli EC4196 (EHEC) BAX-0007592 astC CDS
Automated Process Approved Go view Escherichia coli EC4206 (EHEC) BAW-0010801 astC CDS
Automated Process Approved Go view Escherichia coli EC4401 (EHEC) BAV-0008690 astC CDS
Automated Process Approved Go view Escherichia coli EC4486 (EHEC) BAU-0009943 astC CDS
Automated Process Approved Go view Escherichia coli EC4501 (EHEC) BAT-0007761 astC CDS
Automated Process Approved Go view Escherichia coli EC508 (EHEC) BBJ-0007779 astC CDS
Automated Process Approved Go view Escherichia coli EC869 (EHEC) BBC-0008458 astC CDS
Automated Process Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026536 astC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006716 astC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006506 astC CDS
Person Approved Go view Escherichia coli K-12 MG1655 ABE-0005824 astC CDS
Automated Process Approved Go view Escherichia coli K-12 W3110 ADY-0001795 astC CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001949 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001442 astC CDS
Automated Process Approved Go view Escherichia coli Sakai (EHEC) ACA-0132437 astC CDS
Automated Process Approved Go view Escherichia coli TW14588 (EHEC) BBK-0004120 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001950 astC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001225 argD CDS
Automated Process Approved Go view Salmonella Agona SL483 BBX-0006044 astC CDS
Automated Process Approved Go view Salmonella Arizonae CDC 346-86 BCD-0001746 CDS
Automated Process Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001550 astC CDS
Automated Process Approved Go view Salmonella Dublin CT_02021853 BCB-0006312 CDS
Automated Process Approved Go view Salmonella Enteritidis P125109 BCF-0005676 astC CDS
Automated Process Approved Go view Salmonella Gallinarum 287/91 BCG-0005492 astC CDS
Automated Process Approved Go view Salmonella Hadar RI_05P066 BBT-0008251 CDS
Automated Process Approved Go view Salmonella Heidelberg SL476 BBV-0005794 astC CDS
Automated Process Approved Go view Salmonella Heidelberg SL486 BBW-0008020 astC CDS
Automated Process Approved Go view Salmonella Javiana GA_MM04042433 BCA-0004810 CDS
Automated Process Approved Go view Salmonella Kentucky CDC 191 BBZ-0007560 astC CDS
Automated Process Approved Go view Salmonella Kentucky CVM29188 BBP-0004898 astC CDS
Automated Process Approved Go view Salmonella Newport SL254 BBQ-0005782 CDS
Automated Process Approved Go view Salmonella Newport SL317 BBR-0005009 astC CDS
Automated Process Approved Go view Salmonella Paratyphi A AKU_12601 BCH-0001550 CDS
Automated Process Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001541 astC CDS
Automated Process Approved Go view Salmonella Paratyphi B SPB7 BCC-0002052 CDS
Automated Process Approved Go view Salmonella Saintpaul SARA23 BBN-0006023 CDS
Automated Process Approved Go view Salmonella Saintpaul SARA29 BBM-0007519 CDS
Automated Process Approved Go view Salmonella Schwarzengrund CVM19633 BBO-0005486 CDS
Automated Process Approved Go view Salmonella Schwarzengrund SL480 BBY-0008150 CDS
Automated Process Approved Go view Salmonella Typhi CT18 ABX-0108688 astC CDS
Automated Process Approved Go view Salmonella Typhi Ty2 ABS-0082896 astC CDS
Automated Process Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094443 astC CDS
Automated Process Approved Go view Salmonella Virchow SL491 BBS-0008133 CDS
Automated Process Approved Go view Salmonella Weltevreden SL484 BBU-0008140 astC CDS
Automated Process Approved Go view Salmonella enterica CVM23701 BBL-0006169 CDS
Automated Process Approved Go view Shigella boydii 227 ADV-0001485 astC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007406 astC CDS
Automated Process Approved Go view Shigella dysenteriae 1012 BAA-0006128 astC CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0072671 astC pseudogene
Person Uncurated Go view Shigella flexneri 301 ABT-0087798 astC pseudogene
Automated Process Approved Go view Shigella sonnei 046 ADD-0001530 astC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000372 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007082 argM CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000781 astC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000295 astC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000107 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238399 astC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006633 argM CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001631 astC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004446 argM CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001467 astC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121831 astC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005382 argM CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000606 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009136 argM CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032068 astC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006029 argM CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001383 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007220 argM CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006094 argM CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002039 astC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002384 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002641 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1914357 to 1925577
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001640astECDScomplement19145501915518Downstream
AEC-0001641astBCDScomplement19155111916854Downstream
AEC-0001642astDCDScomplement19168511918329Downstream
AEC-0001643astACDScomplement19183261919360Overlaps Downstream
AEC-0001644astCCDScomplement19193571920577Matches
AEC-0001645xthACDSforward19210231921829Upstream
AEC-0001646ydjXCDSforward19219961922706Upstream
AEC-0001647ydjYCDSforward19227111923388Upstream
AEC-0001648ydjZCDSforward19234031924110Upstream
AEC-0001649ynjACDSforward19241101924658Upstream
AEC-0001650ynjBCDSforward19246681925834Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948