Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001696 (yeaV) - Escherichia coli K-12 DH10B - Feature Annotation

Overview
Context
Seq Similarity
Alignments
Protein Families
Protein Domains
Gene Ontology
Annotations
Comparative
Interactions
Experimental
Strains
Context Table
Links
Release Notes
ASAP ID
AEC-0001696 showshow history
Names
yeaV ECDH10B_1939
Product
predicted BCCT family transporter (pseudogene)
Type
pseudogene showshow history
Location
# Contig Strand Left Right Length (b.p.)
1 Chromosome forward 1971746 1973228 1483

go history

Sequence

Get full DNA sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
BLASTP
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yeaV Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005995
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1939 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Uncurated product predicted BCCT family transporter (pseudogene) Nucleotide Sequence Similarity - ASAP FeatureID: ADR-0006563
Reference: Escherichia coli HS 		Feb 2009
Other
Person Uncurated comment The coordinates of yeaV have been changed from those reported in the GenBank entry (GBAN:CP000948.1) to correspond to the region of similarity to Escherichia coli HS (ASAP:ADR-0006563), adding 37 nucleotides to the N-terminus. Unpublished Sequence Analysis - Author Name, Email; Comment: Eric Neeno-Eckwall, ecneenoeckwa@wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2009
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0005995 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0005995
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Uncurated note N-terminal deletion of 128 nucleotides relative to yeaV in Escherichia coli HS (ASAP:ADR-0006563). Unpublished Sequence Analysis - Author Name, Email; Comment: Eric Neeno-Eckwall, ecneenoeckwa@wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2009
Person Uncurated pseudo Unpublished Sequence Analysis - Author Name, Email; Comment: Eric Neeno-Eckwall, ecneenoeckwa@wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Ortholog
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006464 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008774 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007488 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007531 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010001 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010195 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026595 yeaV CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006563 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0005995 yeaV pseudogene
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001848 yeaV pseudogene
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132494 yeaV CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001423 yeaV CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001477 yeaV CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239800 betT2 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002404 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000970 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123587 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003314 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031383 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002517 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002286 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005481 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002619 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1966746 to 1978228
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001689yeaPCDSforward19663101967335Upstream
AEC-0001690yeaQCDScomplement19676021967850Upstream
AEC-0001691yoaGCDScomplement19679981968180Upstream
AEC-0001692yeaRCDScomplement19681841968543Upstream
AEC-0001693yeaSCDScomplement19687161969354Upstream
AEC-0001694yeaTCDScomplement19694811970404Upstream
AEC-0001695yeaUCDSforward19705071971592Upstream
AEC-0001696yeaVpseudogeneforward19717461973228Matches
AEC-0001697yeaWCDSforward19732601974384Downstream
AEC-0001698yeaXCDSforward19744401975405Downstream
AEC-0001699rndCDScomplement19754591976586Downstream
AEC-0001700fadDCDScomplement19766561978341Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948