Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001700 (fadD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001700 showshow history
Names
fadD ECDH10B_1943
Product
acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1976656 1978341 1686 562
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000873 (IPR000873 AMP-dependent synthetase/ligase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 DH10B
Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fadD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006005
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_1943 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2007
Protein Family
Automated Process Approved protein family IPR000873 AMP-dependent synthetase/ligase Protein Sequence Similarity - InterPro Domain: IPR000873
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006005 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006005
Reference: Escherichia coli K-12 MG1655
Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 DH10B
Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001159 fadD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001507 fadD CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001592 fadD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004373 fadD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008967 fadD CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001760 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010390 fadD CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001704 fadD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007515 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009857 fadD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009300 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078328 fadD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010014 fadD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010346 fadD CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002049 fadD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006468 fadD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006325 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005919 fadD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010219 fadD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008779 fadD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007483 fadD CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007372 fadD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007526 fadD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010734 fadD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010006 fadD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010200 fadD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009792 fadD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008744 fadD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008524 fadD CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026599 fadD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006654 fadD CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006568 fadD CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006005 fadD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001852 fadD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002010 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001382 fadD CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132498 fadD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004052 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002006 fadD CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062637 fadD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001304 fadD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003233 fadD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005490 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002121 fadD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005770 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003984 fadD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003948 fadD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004632 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006380 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005320 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008522 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008528 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005458 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006323 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004460 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001058 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001055 fadD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001407 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006572 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008546 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006045 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007120 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0108909 fadD CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082773 fadD CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0095910 fadD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007507 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006887 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007435 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001419 fadD CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007474 fadD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007868 fadD CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001973 fadD CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072611 fadD CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087750 fadD CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001514 fadD CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001473 fadD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000596 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006841 fadD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002664 fadD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002502 fadD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001516 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238890 fadD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006516 fadD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001770 fadD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004567 fadD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001367 fadD CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122159 fadD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005503 fadD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008748 fadD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001115 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008147 fadD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005792 fadD CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031950 fadD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005904 fadD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001878 fadD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001243 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007675 fadD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005985 fadD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002139 fadD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002518 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002512 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1971656 to 1983341
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001696yeaVpseudogeneforward19717461973228Downstream
AEC-0001697yeaWCDSforward19732601974384Downstream
AEC-0001698yeaXCDSforward19744401975405Downstream
AEC-0001699rndCDScomplement19754591976586Downstream
AEC-0001700fadDCDScomplement19766561978341Matches
AEC-0001701yeaYCDScomplement19785461979127Upstream
AEC-0001702yeaZCDScomplement19791671979862Upstream
AEC-0001703yoaACDScomplement19799201981830Upstream
AEC-0001704yoaBCDSforward19819621982306Upstream
AEC-0001705yoaCCDSforward19827281983027Upstream
AEC-0001706yoaHCDScomplement19831471983326Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948