Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001711 (manX) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001711 showshow history
Names
manX ECDH10B_1955
Product
fused mannose-specific PTS enzymes: IIA component; IIB component
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1990643 1991614 972 324
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004720 (IPR004720 Phosphotransferase system, sorbose subfamily IIB component) Jul 2009
Automated Process Approved IPR004701 (IPR004701 Phosphotransferase system, mannose-type IIA component) Jul 2009
Automated Process Approved IPR013789 (IPR013789 Phosphotransferase system, mannose family IIA component) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004701
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008643 carbohydrate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013789
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004701
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004720
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016773 phosphotransferase activity, alcohol group as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013789
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name manX Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006054
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1955 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product fused mannose-specific PTS enzymes: IIA component; IIB component Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004720 Phosphotransferase system, sorbose subfamily IIB component Protein Sequence Similarity - InterPro Domain: IPR004720
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004701 Phosphotransferase system, mannose-type IIA component Protein Sequence Similarity - InterPro Domain: IPR004701
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013789 Phosphotransferase system, mannose family IIA component Protein Sequence Similarity - InterPro Domain: IPR013789
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006054 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006054
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008643 carbohydrate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013789
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004701
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004720
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004701
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016773 phosphotransferase activity, alcohol group as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013789
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001758 manX CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001563 manX CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020172 manX CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004385 manX CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008980 manX CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001772 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010402 manX CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001715 manX CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009870 manX CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009287 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078342 manX CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010026 manX CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010334 manX CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002062 manX CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006482 manX CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006174 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005934 manX CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010232 manX CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008792 manX CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007469 manX CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007386 manX CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007512 manX CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010721 manX CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010020 manX CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010213 manX CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009778 manX CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008538 manX CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026611 manX CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006642 manX_1 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006582 manX CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006054 manX CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001864 manX CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002022 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001370 manX CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132511 manX CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004038 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002021 manX CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062650 manX CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001471 manX CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002888 manX CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003247 manX CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005478 manX CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001153 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002137 manX CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005758 manX CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003948 manX CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003913 manX CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004621 manX CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006392 manX CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005331 manX CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008511 manX CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008517 manX CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005469 manX CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006334 manX CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004449 manX CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001046 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001043 manX CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001394 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006584 manX CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008535 manX CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006057 manX CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007131 manX CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0108934 manX CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082762 manX CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0095950 manX CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007496 manX CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006898 manX CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001354 manX CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007492 manX CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007855 manX CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002266 manX CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072599 manX CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087738 manX CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001502 manX CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001459 manX CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000621 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005275 gptB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003873 manX_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000111 manX CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002129 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238179 manX CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005765 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001371 manX CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004223 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001657 manX CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121156 manX CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007195 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008341 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000803 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008025 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007103 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032278 manX CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006250 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002843 manX CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001633 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008452 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006348 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001708 manX CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002084 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002920 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1985643 to 1996614
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001708sdaACDSforward19855271986891Upstream
AEC-0001709yoaDCDSforward19870221988620Upstream
AEC-0001710yoaECDScomplement19886241990180Upstream
AEC-0001711manXCDSforward19906431991614Matches
AEC-0001712manYCDSforward19916771992477Downstream
AEC-0001713manZCDSforward19924811993341Downstream
AEC-0001714yobDCDSforward19933961993854Downstream
AEC-0001715yebNCDSforward19942831994849Downstream
AEC-0001716rrmACDScomplement19948461995655Downstream
AEC-0001717cspCCDScomplement19958211996030Downstream
AEC-0001718yobFCDScomplement19960431996186Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948