Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001712 (manY) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001712 showshow history
Names
manY ECDH10B_1956
Product
mannose-specific enzyme IIC component of PTS
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1991677 1992477 801 267
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004700 (IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004700
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004700
Reference: Escherichia coli K-12 DH10B
Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name manY Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006056
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_1956 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product mannose-specific enzyme IIC component of PTS Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2007
Protein Family
Automated Process Approved protein family IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit Protein Sequence Similarity - InterPro Domain: IPR004700
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006056 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006056
Reference: Escherichia coli K-12 MG1655
Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004700
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004700
Reference: Escherichia coli K-12 DH10B
Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001957 manY CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001760 manY CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020173 manY CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004386 manY CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001773 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010403 manY CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001716 manY CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007500 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078343 manY CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010027 manY CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010333 manY CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002063 manY CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006483 manY CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006173 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010233 manY CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008793 manY CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007387 manY CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007511 manY CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010720 manY CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010021 manY CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010214 manY CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008539 manY CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026612 manY CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006641 manY CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006583 manY CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006056 manY CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001865 manY CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002023 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001369 manY CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132512 manY CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004037 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002022 manY CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062651 manY CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001467 manY CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000627 manY CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003249 manY CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005477 manY CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001152 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002138 manY CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005757 manY CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003944 manY CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003909 manY CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004620 manY CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006393 manY CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005332 manY CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008510 manY CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008516 manY CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005470 manY CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006335 manY CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004448 manY CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001045 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001042 manY CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001393 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006585 manY CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008534 manY CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006058 manY CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007132 manY CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0108935 manY CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082761 manY CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0095953 manY CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007495 manY CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006899 manY CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007901 manY CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001355 manY CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007493 manY CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007854 manY CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072598 manY CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087737 manY CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001501 manY CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001458 manY CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000620 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005271 manY CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003874 manY CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000110 manY CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002128 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238180 manY CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005766 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001370 manY CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004222 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001658 manY CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121147 manY CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007194 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008342 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008024 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007104 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032279 manY CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006251 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002844 manY CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001634 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008451 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006349 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001707 manY CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002083 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002921 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1986677 to 1997477
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001708sdaACDSforward19855271986891Upstream
AEC-0001709yoaDCDSforward19870221988620Upstream
AEC-0001710yoaECDScomplement19886241990180Upstream
AEC-0001711manXCDSforward19906431991614Upstream
AEC-0001712manYCDSforward19916771992477Matches
AEC-0001713manZCDSforward19924811993341Downstream
AEC-0001714yobDCDSforward19933961993854Downstream
AEC-0001715yebNCDSforward19942831994849Downstream
AEC-0001716rrmACDScomplement19948461995655Downstream
AEC-0001717cspCCDScomplement19958211996030Downstream
AEC-0001718yobFCDScomplement19960431996186Downstream
AEC-0001719yebOCDScomplement19968561997143Downstream
AEC-0001720yobGCDScomplement19972181997361Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948