Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001743 (purT) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001743 showshow history
Names
purT ECDH10B_1990
Product
phosphoribosylglycinamide formyltransferase 2
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2019476 2020654 1179 393
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013817 (IPR013817 (DEPRECATED) Pre-ATP-grasp fold) Jul 2009
Automated Process Approved IPR013815 (IPR013815 ATP-grasp fold, subdomain 1) Jul 2009
Automated Process Approved IPR013816 (IPR013816 (DEPRECATED) ATP-grasp fold, subdomain 2) Jul 2009
Automated Process Approved IPR003135 (IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type) Jul 2009
Automated Process Approved IPR011761 (IPR011761 ATP-grasp fold) Jul 2009
Automated Process Approved IPR005862 (IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase) Jul 2009
Automated Process Approved IPR016185 (IPR016185 Pre-ATP-grasp domain superfamily) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009113 purine nucleobase biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005862
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016742 hydroxymethyl-, formyl- and related transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005862
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013817
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013817
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name purT Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006162
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1990 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product phosphoribosylglycinamide formyltransferase 2 Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type Protein Sequence Similarity - InterPro Domain: IPR003135
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013816 (DEPRECATED) ATP-grasp fold, subdomain 2 Protein Sequence Similarity - InterPro Domain: IPR013816
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011761 ATP-grasp fold Protein Sequence Similarity - InterPro Domain: IPR011761
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase Protein Sequence Similarity - InterPro Domain: IPR005862
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016185 Pre-ATP-grasp domain superfamily Protein Sequence Similarity - InterPro Domain: IPR016185
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013815 ATP-grasp fold, subdomain 1 Protein Sequence Similarity - InterPro Domain: IPR013815
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013817 (DEPRECATED) Pre-ATP-grasp fold Protein Sequence Similarity - InterPro Domain: IPR013817
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006162 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006162
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009113 purine nucleobase biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005862
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013817
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016742 hydroxymethyl-, formyl- and related transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005862
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013817
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001213 purT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001512 purT CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019958 purT CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001558 purT CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004430 purT CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008361 purT CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001805 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005268 purT CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001740 purT CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007459 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009440 purT CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008907 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008433 purT CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010014 purT CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002098 purT CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006516 purT CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004094 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010269 purT CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009665 purT CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010220 purT CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007424 purT CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010318 purT CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010684 purT CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010477 purT CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010251 purT CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007937 purT CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010079 purT CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008578 purT CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026644 purT CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008154 purT CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006618 purT CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006162 purT CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001899 purT CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002055 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001337 purT CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132543 purT CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004002 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002059 purT CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062741 purT CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001285 purT CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001834 purT CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004333 purT CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005419 purT CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001104 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002217 purT CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005639 purT CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003721 purT CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003634 purT CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004544 purT CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006459 purT CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005399 purT CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008258 purT CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007988 purT CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005576 purT CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006406 purT CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004371 purT CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000985 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000986 purT CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001295 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006645 purT CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007648 purT CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006120 purT CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007715 purT CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0109135 purT CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082708 purT CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0096095 purT CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007425 purT CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007003 purT CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007965 purT CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001270 purT CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007536 purT CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006649 purT CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001284 purT CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073027 purT CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088146 purT CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001985 purT CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001406 purT CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000627 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005294 purT CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003867 purT CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000117 purT CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002135 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238142 purT CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005748 purT CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001389 purT CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004241 purT CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001642 purT CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121204 purT CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007212 purT CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008324 purT CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004087 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008042 purT CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007086 purT CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032259 purT CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006233 purT CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002825 purT CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001615 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008469 purT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006331 purT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001725 purT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002102 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002903 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2014476 to 2025654
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001737yobBCDSforward20140352014691Upstream
AEC-0001738exoXCDSforward20147152015377Upstream
AEC-0001739ptrBCDScomplement20153742017434Upstream
AEC-0001740yebECDScomplement20176432018302Upstream
AEC-0001741yebFCDScomplement20186292018997Upstream
AEC-0001742yebGCDScomplement20190522019342Upstream
AEC-0001743purTCDSforward20194762020654Matches
AEC-0001744edaCDScomplement20207102021351Downstream
AEC-0001745eddCDScomplement20213882023199Downstream
AEC-0001746zwfCDScomplement20234342024909Downstream
AEC-0001747yebKCDSforward20252472026116Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948