Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001744 (eda) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001744 showshow history
Names
eda ECDH10B_1991
Product
multifunctional 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase and oxaloacetate decarboxylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2020710 2021351 642 214
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Jul 2009
Automated Process Approved IPR000887 (IPR000887 KDPG/KHG aldolase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name eda Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006164
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1991 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product multifunctional 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase and oxaloacetate decarboxylase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000887 KDPG/KHG aldolase Protein Sequence Similarity - InterPro Domain: IPR000887
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006164 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006164
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001021 eda CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000450 eda CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019960 eda CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001296 eda CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004431 eda CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008360 eda CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001806 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005269 eda CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001741 eda CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007458 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009439 eda CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008906 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078382 eda CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008432 eda CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010015 eda CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002099 eda CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006517 eda CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004095 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005978 eda CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010270 eda CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009666 eda CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010221 eda CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007425 eda CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010319 eda CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010683 eda CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010476 eda CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010252 eda CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007936 eda CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010078 eda CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008579 eda CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026645 eda CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008153 eda CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006619 eda CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006164 eda CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001900 eda CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002056 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001336 eda CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132544 eda CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004001 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002060 eda CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062742 eda CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001274 eda CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000650 eda CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004334 eda CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005418 eda CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001103 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002218 eda CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005638 eda CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003717 eda CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003630 eda CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004543 eda CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006460 eda CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005400 eda CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008259 eda CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007989 eda CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005577 eda CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006407 eda CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004370 eda CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000984 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000985 eda CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001294 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006646 eda CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007647 eda CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006121 eda CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007716 eda CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0109137 eda CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082707 eda CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0096097 eda CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007424 eda CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007004 eda CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007966 eda CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001271 eda CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007537 eda CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006648 eda CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001285 eda CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073028 eda CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088147 eda CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001986 eda CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001405 eda CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000603 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006863 eda CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002657 eda CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003983 eda CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001525 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238876 eda CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006524 eda CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001761 eda CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004559 eda CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001374 eda CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122132 eda CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005495 eda CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008756 eda CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008155 eda CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005800 eda CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031957 eda CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005912 eda CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001869 eda CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001252 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007682 eda CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005992 eda CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002132 eda CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002509 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002521 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2015710 to 2026351
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001739ptrBCDScomplement20153742017434Downstream
AEC-0001740yebECDScomplement20176432018302Downstream
AEC-0001741yebFCDScomplement20186292018997Downstream
AEC-0001742yebGCDScomplement20190522019342Downstream
AEC-0001743purTCDSforward20194762020654Downstream
AEC-0001744edaCDScomplement20207102021351Matches
AEC-0001745eddCDScomplement20213882023199Upstream
AEC-0001746zwfCDScomplement20234342024909Upstream
AEC-0001747yebKCDSforward20252472026116Upstream
AEC-0001748pykACDSforward20262442027686Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948