Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001753 (znuB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001753 showshow history
Names
znuB ECDH10B_2000
Product
zinc transporter subunit: membrane component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2032009 2032794 786 262
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001626 (IPR001626 ABC transporter, TroCD-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001626
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001626
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0042626 ATPase-coupled transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001626
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001626
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name znuB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006201
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2000 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product zinc transporter subunit: membrane component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001626 ABC transporter, TroCD-like Protein Sequence Similarity - InterPro Domain: IPR001626
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006201 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006201
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001626
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001626
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001626
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0042626 ATPase-coupled transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001626
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000584 znuB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000764 znuB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017082 znuB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001550 znuB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004441 znuB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008350 znuB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001815 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005278 znuB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001750 znuB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007447 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009429 znuB CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078392 znuB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008423 znuB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010025 znuB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002108 znuB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006526 znuB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004589 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010280 znuB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006073 znuB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007435 znuB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010329 znuB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010673 znuB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009776 znuB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010262 znuB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007925 znuB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008589 znuB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026654 znuB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008143 znuB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006629 znuB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006201 znuB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001909 znuB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002066 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001326 znuB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132553 znuB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003991 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002070 znuB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062750 znuB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001289 znuB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002918 znuB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003773 znuB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005409 znuB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001093 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002231 znuB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005628 znuB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003682 zunB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003596 zunB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004534 znuB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006469 znuB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005409 znuB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008268 znuB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008301 znuB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005586 znuB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006416 znuB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004359 znuB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000975 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000976 znuB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001282 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006655 znuB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007638 znuB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006130 znuB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007725 znuB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0109165 znuB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082698 znuB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0096128 znuB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007413 znuB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007016 znuB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008264 znuB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001292 znuB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006351 znuB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006638 znuB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001295 znuB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073038 znuB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088155 znuB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001995 yebI CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001387 znuB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000611 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006894 znuB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002648 znuB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000235 znuB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001533 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238858 znuB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006532 znuB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001751 znuB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004550 znuB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001382 znuB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122100 znuB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005487 znuB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008764 znuB CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008163 znuB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005809 znuB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031965 znuB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005921 znuB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001859 znuB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001261 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007690 znuB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006000 znuB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002124 znuB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002496 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002533 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2027009 to 2037794
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001748pykACDSforward20262442027686Upstream
AEC-0001749lpxMCDScomplement20278172028788Upstream
AEC-0001750yebACDScomplement20289082030230Upstream
AEC-0001751znuACDScomplement20302462031178Upstream
AEC-0001752znuCCDSforward20312572032012Overlaps Upstream
AEC-0001753znuBCDSforward20320092032794Matches
AEC-0001754ruvBCDScomplement20329412033951Downstream
AEC-0001755ruvACDScomplement20339602034571Downstream
AEC-0001756yebBCDSforward20348462035448Downstream
AEC-0001757ruvCCDScomplement20354502035971Downstream
AEC-0001758yebCCDScomplement20360062036746Downstream
AEC-0001759nudBCDScomplement20367752037227Downstream
AEC-0001760aspSCDScomplement20373452039117Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948