Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001760 (aspS) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001760 showshow history
Names
aspS ECDH10B_2007
Product
aspartyl-tRNA synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2037345 2039117 1773 591
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012340 (IPR012340 Nucleic acid-binding, OB-fold) Jul 2009
Automated Process Approved IPR004365 (IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type) Jul 2009
Automated Process Approved IPR004364 (IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N)) Jul 2009
Automated Process Approved IPR004115 (IPR004115 GAD-like domain superfamily) Jul 2009
Automated Process Approved IPR006195 (IPR006195 Aminoacyl-tRNA synthetase, class II) Jul 2009
Automated Process Approved IPR002312 (IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb) Jul 2009
Automated Process Approved IPR004524 (IPR004524 Aspartate-tRNA ligase, type 1) Jul 2009
Automated Process Approved IPR016027 (IPR016027 (DEPRECATED) Nucleic acid-binding, OB-fold-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006422 aspartyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002312
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004364
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004364
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004364
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004815 aspartate-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002312
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016874 ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004524
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004364
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003676 nucleic acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004365
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004364
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004364
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name aspS Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006226
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2007 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product aspartyl-tRNA synthetase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) Protein Sequence Similarity - InterPro Domain: IPR004364
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type Protein Sequence Similarity - InterPro Domain: IPR004365
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012340 Nucleic acid-binding, OB-fold Protein Sequence Similarity - InterPro Domain: IPR012340
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004115 GAD-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR004115
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006195 Aminoacyl-tRNA synthetase, class II Protein Sequence Similarity - InterPro Domain: IPR006195
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016027 (DEPRECATED) Nucleic acid-binding, OB-fold-like Protein Sequence Similarity - InterPro Domain: IPR016027
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004524 Aspartate-tRNA ligase, type 1 Protein Sequence Similarity - InterPro Domain: IPR004524
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb Protein Sequence Similarity - InterPro Domain: IPR002312
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006226 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006226
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004364
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004364
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006422 aspartyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002312
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004364
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004364
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003676 nucleic acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004365
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004364
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016874 ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004524
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004815 aspartate-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002312
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004364
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000224 aspS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000201 aspS CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017071 aspS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001544 aspS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004449 aspS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008343 aspS CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001822 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005285 aspS CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001757 aspS CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007440 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009422 aspS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008450 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078399 aspS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008416 aspS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010032 aspS CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002115 aspS CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006533 aspS CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005998 aspS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010287 aspS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009684 aspS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006080 aspS CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007442 aspS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009164 aspS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010666 aspS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009783 aspS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010269 aspS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007918 aspS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009603 aspS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009993 aspS CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026662 aspS CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008136 aspS CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006636 aspS CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006226 aspS CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001916 aspS CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002073 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001319 aspS CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132560 aspS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003984 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002077 aspS CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062760 aspS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001281 aspS CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001843 aspS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003783 aspS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005400 aspS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001086 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002241 aspS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005619 aspS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003656 aspS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003570 aspS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004525 aspS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006477 aspS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005417 aspS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008277 aspS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008293 aspS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005594 aspS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006424 aspS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004348 aspS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000967 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000968 aspS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001272 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006665 aspS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007626 aspS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006138 aspS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007733 aspS CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0109187 aspS CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082690 aspS CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0096151 aspS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007404 aspS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007024 aspS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008276 aspS CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001309 aspS CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006503 aspS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006631 aspS CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001302 aspS CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073048 aspS CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088161 aspS CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002002 aspS CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001380 aspS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000319 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006916 aspS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002641 aspS CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000242 aspS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001540 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238852 aspS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006539 aspS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001744 aspS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004544 aspS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001388 aspS CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122081 aspS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005481 aspS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006586 aspS CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001534 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008170 aspS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005816 aspS CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031972 aspS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005927 aspS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001853 aspS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001268 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007698 aspS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006006 aspS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002118 aspS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002490 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002540 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2032345 to 2044117
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001753znuBCDSforward20320092032794Downstream
AEC-0001754ruvBCDScomplement20329412033951Downstream
AEC-0001755ruvACDScomplement20339602034571Downstream
AEC-0001756yebBCDSforward20348462035448Downstream
AEC-0001757ruvCCDScomplement20354502035971Downstream
AEC-0001758yebCCDScomplement20360062036746Downstream
AEC-0001759nudBCDScomplement20367752037227Downstream
AEC-0001760aspSCDScomplement20373452039117Matches
AEC-0001761yecDCDSforward20394272039993Upstream
AEC-0001762yecECDSforward20399902040808Upstream
AEC-0001763yecNCDSforward20408612041256Upstream
AEC-0001764yecOCDSforward20412972042040Upstream
AEC-0001765yecPCDSforward20420372043008Upstream
AEC-0001766torZCDScomplement20431732045602Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948