Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001770 (argS) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001770 showshow history
Names
argS ECDH10B_2017
Product
arginyl-tRNA synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2048657 2050390 1734 578
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005148 (IPR005148 Arginyl tRNA synthetase N-terminal domain) Jul 2009
Automated Process Approved IPR014729 (IPR014729 Rossmann-like alpha/beta/alpha sandwich fold) Jul 2009
Automated Process Approved IPR015945 (IPR015945 (DEPRECATED) Arginyl-tRNA synthetase, class Ia, core) Jul 2009
Automated Process Approved IPR008909 (IPR008909 DALR anticodon binding) Jul 2009
Automated Process Approved IPR001278 (IPR001278 Arginine-tRNA ligase) Jul 2009
Automated Process Approved IPR001412 (IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site) Jul 2009
Automated Process Approved IPR009080 (IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006420 arginyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005148
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005148
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005148
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005148
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004814 arginine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005148
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005148
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name argS Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006264
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2017 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product arginyl-tRNA synthetase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Protein Sequence Similarity - InterPro Domain: IPR014729
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005148 Arginyl tRNA synthetase N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR005148
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015945 (DEPRECATED) Arginyl-tRNA synthetase, class Ia, core Protein Sequence Similarity - InterPro Domain: IPR015945
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001278 Arginine-tRNA ligase Protein Sequence Similarity - InterPro Domain: IPR001278
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding Protein Sequence Similarity - InterPro Domain: IPR009080
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Protein Sequence Similarity - InterPro Domain: IPR001412
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR008909 DALR anticodon binding Protein Sequence Similarity - InterPro Domain: IPR008909
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006264 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006264
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006420 arginyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005148
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005148
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005148
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005148
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005148
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004814 arginine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005148
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000233 argS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000203 argS CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017058 argS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001534 argS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004460 argS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008333 argS CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001834 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009652 argS CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001770 argS CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007428 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009027 argS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008440 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078410 argS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008405 argS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009334 argS CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002125 argS CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006545 argS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000131 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006008 argS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010297 argS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009694 argS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006090 argS CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007453 argS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009154 argS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010656 argS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009793 argS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010279 argS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007908 argS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009593 argS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010003 argS CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026672 argS CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008125 argS CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006648 argS CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006264 argS CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001926 argS CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002143 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001309 argS CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132570 argS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003973 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002087 argS CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062783 argS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001309 argS CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001844 argS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003888 argS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005391 argS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001078 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002249 argS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005610 argS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003636 argS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003550 argS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004516 argS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006486 argS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005426 argS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008285 argS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008284 argS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005603 argS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006433 argS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004339 argS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000959 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000960 argS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001262 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006674 argS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007617 argS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006147 argS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007742 argS CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0109204 argS CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082682 argS CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0096176 argS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007395 argS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007033 argS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008285 argS CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001231 argS CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007580 argS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006842 argS CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001339 argS CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073116 argS CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088204 argS CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002053 argS CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001339 argS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000326 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006933 argS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002633 argS CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000250 argS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003581 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238840 argS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006547 argS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001737 argS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004536 argS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001395 argS CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122063 argS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005473 argS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006594 argS CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003972 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008178 argS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005824 argS CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031980 argS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005935 argS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001846 argS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001276 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007706 argS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006014 argS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002111 argS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002483 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002547 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2043657 to 2055390
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001766torZCDScomplement20431732045602Upstream
AEC-0001767torYCDScomplement20456272046727Upstream
AEC-0001768cutCCDScomplement20471152047861Upstream
AEC-0001769yecMCDScomplement20478752048441Upstream
AEC-0001770argSCDSforward20486572050390Matches
AEC-0001771yecTCDSforward20505672051055Downstream
AEC-0001772flhECDScomplement20511752051567Downstream
AEC-0001773flhACDScomplement20515672053645Downstream
AEC-0001774flhBCDScomplement20536382054786Downstream
AEC-0001775cheZCDScomplement20549882055632Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948