Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001788 (araG) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001788 showshow history
Names
araG ECDH10B_2040
Product
subunit of L-arabinose ABC transporter containing ATP-binding components
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2072587 2074101 1515 505
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Jul 2009
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Jul 2009
Automated Process Approved IPR005829 (IPR005829 Sugar transporter, conserved site) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name araG Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006328
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2040 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product subunit of L-arabinose ABC transporter containing ATP-binding components Published Sequence Analysis - PubMed Central ID: 2445996
Reference: Escherichia coli BEK180 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005829 Sugar transporter, conserved site Protein Sequence Similarity - InterPro Domain: IPR005829
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006328 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006328
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002422 araG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002335 araG CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015567 araG CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001829 araG CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004476 araG CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008310 araG CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001853 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009629 araG CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001789 araG CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007403 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010247 pseudogene
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078432 araG CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008380 araG CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009359 araG CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002147 araG CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006568 araG CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006031 araG CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010320 araG CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009717 araG CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006113 araG CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007476 araG CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009131 araG CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010633 araG CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009821 araG CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010302 araG CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007884 araG CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009916 araG CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010026 araG CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026695 araG CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008101 araG CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006674 araG CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006328 araG CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001948 araG CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002164 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001285 araG CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132592 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003949 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002107 araG CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062536 araG CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001326 araG CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000580 araG CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000557 araG CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001210 araG CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006420 araG CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006812 araG CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001269 araG CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073148 araG CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088231 araG CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001313 araG CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002790 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005890 araG CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003010 araG_3 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003346 araG CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000400 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239196 araG CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006375 araG CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001953 araG CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004752 araG CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001201 araG CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122757 araG CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007102 araG CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007667 araG CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003031 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007458 araG CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005970 araG CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031804 araG CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005722 araG CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002078 araG CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001047 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007107 araG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005855 araG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002259 araG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002667 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002362 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2067587 to 2079101
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000032IS5.7repeat_regioncomplement20671042068298Downstream
AEC-0001785yecGCDSforward20687852069213Downstream
AEC-0001786otsACDScomplement20692202070644Downstream
AEC-0001787otsBCDScomplement20706192071419Downstream
AEC-0004019araHCDScomplement20715862072575Downstream
AEC-0001788araGCDScomplement20725872074101Matches
AEC-0001789araFCDScomplement20741712075160Upstream
AEC-0001790yecICDSforward20759572076460Upstream
AEC-0004078yecJCDScomplement20765392076790Upstream
AEC-0001791yecRCDSforward20772542077577Upstream
AEC-0001792ftnCDSforward20777482078245Upstream
AEC-0001793yecHCDScomplement20782832078522Upstream
AEC-0001794tyrPCDSforward20787132079924Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948