Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001789 (araF) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001789 showshow history
Names
araF ECDH10B_2041
Product
periplasmic-binding component of L-arabinose ABC transporter (precursor)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2074171 2075160 990 330
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001761 (IPR001761 Periplasmic binding protein/LacI sugar binding domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name araF Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006330
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2041 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product periplasmic-binding component of L-arabinose ABC transporter (precursor) Experimental - PubMed ID: 2445995
Reference: Escherichia coli BEK180 		Mar 2008
Protein Family
Automated Process Approved protein family IPR001761 Periplasmic binding protein/LacI sugar binding domain Protein Sequence Similarity - InterPro Domain: IPR001761
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006330 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006330
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002477 araF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002386 araF CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015566 araF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001830 araF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004477 araF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008309 araF CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001854 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009628 araF CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001790 araF CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007401 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010359 araF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010246 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078433 araF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008379 araF CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002148 araF CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006569 araF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002157 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006032 araF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010321 araF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009718 araF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006114 araF CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007477 araF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009130 araF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010632 araF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009822 araF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010303 araF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007883 araF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009917 araF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010027 araF CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026696 araF CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008100 araF CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006675 araF CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006330 araF CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001949 araF CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002165 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001284 araF CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132593 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003948 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002108 araF CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062537 araF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001327 araF CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000581 araF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000558 araF CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006421 araF CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001268 araF CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002086 araF CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001312 araF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002791 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005887 araF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003011 araF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003345 araF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000399 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239195 araF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006374 araF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001951 araF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004751 araF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001202 araF CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122755 araF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007103 araF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007668 araF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003030 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007459 araF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005971 araF CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031803 araF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005723 araF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002076 araF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001048 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007108 araF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005856 araF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002258 araF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002665 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002363 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2069171 to 2080160
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001785yecGCDSforward20687852069213Downstream
AEC-0001786otsACDScomplement20692202070644Downstream
AEC-0001787otsBCDScomplement20706192071419Downstream
AEC-0004019araHCDScomplement20715862072575Downstream
AEC-0001788araGCDScomplement20725872074101Downstream
AEC-0001789araFCDScomplement20741712075160Matches
AEC-0001790yecICDSforward20759572076460Upstream
AEC-0004078yecJCDScomplement20765392076790Upstream
AEC-0001791yecRCDSforward20772542077577Upstream
AEC-0001792ftnCDSforward20777482078245Upstream
AEC-0001793yecHCDScomplement20782832078522Upstream
AEC-0001794tyrPCDSforward20787132079924Upstream
AEC-0001795yecACDScomplement20799862080651Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948